Phylogenetic & expression analysis of the bHLH transcription factor family: genomic approach to cellular differentiation

ABSTRACT: A phylogenetic analysis of seven different species (human, mouse, rat, worm, fly, yeast, and plant) utilizing all (541) basic helix-loop-helix (bHLH) genes identified, including expressed sequence tags (EST), was performed. A super-tree involving six clades and a structural categorization involving the entire coding sequence was established. A nomenclature was developed based on clade distribution to discuss the functional and ancestral relationships of all the genes. The position/location of specific genes on the phylogenetic tree in relation to known bHLH factors allows for predictions of the potential functions of uncharacterized bHLH factors, including EST's. A genomic analysis using microarrays for four different mouse cell types (i.e. Sertoli, Schwann, thymic, and muscle) was perform

ORGANISM(S): Rattus norvegicus

SUBMITTER: Eric Roalson 

PROVIDER: E-GEOD-20259 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress