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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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KDM6B-induced gene expression changes in transfected CD10-positive GC B cells

ABSTRACT: In this study, we have investigated the effect of lysine-specific demethylase 6B (KDM6B) on gene expression in normal human germinal center (GC) B cells using a non-viral vector-based system. Gene expression was compared between KDM6B-transfected and control vector-transfected GC B cells from three patients. RNA from the MACS-sorted transfected GC B cells was amplified. 10ug of fragmented cRNA was hybridized to HG-U133 Plus 2.0 microarrays. Differentially expressed genes were identified using Affymetrix GCOS pairwise analysis.

ORGANISM(S): Homo sapiens

SUBMITTER: Wenbin Wei

PROVIDER: E-GEOD-24044 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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The H3K27me3 demethylase, KDM6B, is induced by Epstein-Barr virus and over-expressed in Hodgkin's Lymphoma.

Anderton J A JA Bose S S Vockerodt M M Vrzalikova K K Wei W W Kuo M M Helin K K Christensen J J Rowe M M Murray P G PG Woodman C B CB

Oncogene 20110117 17

There is now evidence for both increased and decreased activity of the enzymes controlling the methylation of lysine 27 on histone 3 (H3K27) in cancer. One of these enzymes, KDM6B formally known as JMJD3, a histone demethylase, which removes the trimethyl mark from H3K27, is required for the lineage commitment and terminal differentiation of neural stem cells and of keratinocytes. Our results suggest that KDM6B may also have a role in antigen-driven B-cell differentiation. KDM6B expression incre ...[more]

PMID: 21242977

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