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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Profiling of Argonaute (AGO) 2-associated sRNAs after infection of bacterial pathogen Pseudomonas syringae

ABSTRACT: Transgenic Arabidopsis plants (AGO2::HA:AGO2) were treated with either mock (10 mM MgCl2) or Pseudomonas syringae pv. tomato (Pst) expressing avrRpt2 (R2) at a concentration of 2 x 107 cfu/ml for 14 hours. sRNAs associated with AGO1 and AGO2 were co-immunoprecipitated using antibodies against either AGO1 (AGO1-IP), or HA (hemagglutinin) (AGO2-IP). As controls, we also gel-purified the 18-28 nt fraction of the total RNAs from an AGO2 mutant (ago2-1). The co-immunoprecipitated or gel-purified RNAs were cloned and sequenced by Illumina deep sequencing. Examination of AGO-associated sRNAs in pathogen-treated or control plants

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Wei-Chi Wang

PROVIDER: E-GEOD-26161 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Arabidopsis Argonaute 2 regulates innate immunity via miRNA393(∗)-mediated silencing of a Golgi-localized SNARE gene, MEMB12.

Zhang Xiaoming X Zhao Hongwei H Gao Shang S Wang Wei-Chi WC Katiyar-Agarwal Surekha S Huang Hsien-Da HD Raikhel Natasha N Jin Hailing H

Molecular cell 20110501 3

Argonaute (AGO) proteins are critical components of RNA silencing pathways that bind small RNAs and mediate gene silencing at their target sites. We found that Arabidopsis AGO2 is highly induced by the bacterial pathogen Pseudomonas syringae pv. tomato (Pst). Further genetic analysis demonstrated that AGO2 functions in antibacterial immunity. One abundant species of AGO2-bound small RNA is miR393b(∗), which targets a Golgi-localized SNARE gene, MEMB12. Pst infection downregulates MEMB12 in a miR ...[more]

PMID: 21549312

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Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis

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2014-08-30 | E-GEOD-60929 | biostudies-arrayexpress

Profiling of Argonaute (AGO) 2-associated sRNAs after infection of bacterial pathogen Pseudomonas syringae

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