Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Coordinated Chromatin Remodeling induced by Demethylation requires SRCAP mediated H2A.Z exchange [Methylation]

ABSTRACT: Genome wide DNA methylation profiling of RKO cells with combination treatments of non-target siRNA or SRCAP siRNA and PBS or 1uM 5-Aza-CdR treatment. The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across 27,578 CpGs in treated RKO cells. Samples included cells under 4 different treatments. The sample treated with non target siRNA and PBS serves as control sample. Bisulphite converted DNA from the 4 samples were hybridised to the Illumina Infinium 27k Human Methylation Beadchip v1.2

ORGANISM(S): Homo sapiens

SUBMITTER: Houtan Noushmehr 

PROVIDER: E-GEOD-26433 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

Gene reactivation by 5-aza-2'-deoxycytidine-induced demethylation requires SRCAP-mediated H2A.Z insertion to establish nucleosome depleted regions.

Yang Xiaojing X   Noushmehr Houtan H   Han Han H   Andreu-Vieyra Claudia C   Liang Gangning G   Jones Peter A PA  

PLoS genetics 20120329 3

5-Aza-2'-deoxycytidine, approved by the FDA for the treatment of myelodysplastic syndrome (MDS), is incorporated into the DNA of dividing cells where it specifically inhibits DNA methylation by forming covalent complexes with the DNA methyltransferases (DNMTs). In an effort to study the correlations between DNA methylation, nucleosome remodeling, and gene reactivation, we investigate the integrated epigenetic events that worked coordinately to reprogram the methylated and closed promoters back t  ...[more]

Similar Datasets

Methylation profiling Coordinated Chromatin Remodeling induced by Demethylation requires SRCAP mediated H2A.Z exchange [Methylation]
2013-01-01 | GSE26433 | GEO
Methylation profiling Epigenome analysis of primary MCL
2015-12-31 | GSE45253 | GEO
Transcriptomics Epigenome analysis of primary MCL
2015-12-31 | E-GEOD-45253 | biostudies-arrayexpress
Transcriptomics Epigenome analysis of placenta samples from newborns
2012-03-28 | E-GEOD-36829 | biostudies-arrayexpress
Transcriptomics Epigenome analysis of saliva samples from alcohol users
2011-12-01 | E-GEOD-34035 | biostudies-arrayexpress
Methylation profiling Epigenome analysis of placenta samples from newborns
2012-03-29 | GSE36829 | GEO
Transcriptomics Epigenome analysis of cord blood samples from newborns
2012-03-28 | E-GEOD-36812 | biostudies-arrayexpress
Transcriptomics Epigenome analysis of human brain gliomas (part 2)
2013-12-12 | E-GEOD-53228 | biostudies-arrayexpress
Methylation profiling Epigenome analysis of cord blood samples from newborns
2012-03-29 | GSE36812 | GEO
Methylation profiling Epigenome analysis of human brain gliomas (part 2)
2013-12-12 | GSE53228 | GEO