Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Activator protein-2γ is a critical determinant of estrogen receptor interactome formation and gene transcription in breast cancer [expression]


ABSTRACT: Estrogen receptor α (ERα) is key player in the progression of breast cancer. ERα binds to DNA and mediates long-range chromatin interactions throughout the genome, but the underlying mechanism in this process is unclear. Here, we show that AP-2 motifs are highly enriched in the ERα binding sites (ERBS) identified from the recent ChIA-PET of ERα. More importantly, we demonstrate that AP-2γ (also known as TFAP2C), a member of the AP-2 family which has been implicated in breast cancer oncogenesis, is recruited to chromatin in a ligand-independent manner and co-localized with ERα binding events. Furthermore, pertubation of AP-2γ expression disrupts ERα DNA binding, long-range chromatin interactions, and gene transcription. Using ChIP-seq, we show that AP-2γ and ERα binding occurs in close proximity on a genome-wide scale. The majority of these shared genomic regions are also occupied by the pioneer factor, FoxA1. AP-2γ is required for efficient FoxA1 binding and vice versa. Finally, we show that most ERBS associated with long-range chromatin interactions are co-localized with both AP-2γ and FoxA1. Together, our results suggest AP-2γ is an essential factor in ERα-mediated transcription, primarily working together with FoxA1 to facilitate ERα binding and long-range chromatin interactions. Gene expression profiling of negative control (NC) and AP-2γ siRNA transfected MCF-7, with and without E2 (estradiol) stimulation using microarray.

ORGANISM(S): Homo sapiens

SUBMITTER: SI KEE TAN 

PROVIDER: E-GEOD-26740 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription.

Tan Si Kee SK   Lin Zhen Hua ZH   Chang Cheng Wei CW   Varang Vipin V   Chng Kern Rei KR   Pan You Fu YF   Yong Eu Leong EL   Sung Wing Kin WK   Cheung Edwin E  

The EMBO journal 20110513 13


Oestrogen receptor α (ERα) is key player in the progression of breast cancer. Recently, the cistrome and interactome of ERα were mapped in breast cancer cells, revealing the importance of spatial organization in oestrogen-mediated transcription. However, the underlying mechanism of this process is unclear. Here, we show that ERα binding sites (ERBS) identified from the Chromatin Interaction Analysis-Paired End DiTag of ERα are enriched for AP-2 motifs. We demonstrate the transcription factor, AP  ...[more]

Similar Datasets

2011-06-03 | E-GEOD-23852 | biostudies-arrayexpress
2011-06-03 | GSE23852 | GEO
2011-06-02 | GSE26740 | GEO
2023-11-09 | GSE247431 | GEO
2023-11-09 | GSE247414 | GEO
2023-11-09 | GSE247412 | GEO
2023-11-09 | GSE247411 | GEO
| PRJNA384993 | ENA
2010-11-17 | E-GEOD-25315 | biostudies-arrayexpress
2009-12-19 | E-GEOD-15481 | biostudies-arrayexpress