Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

9 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Quantification of allele-specific expression patterns in Arabidopsis by tag profiling

ABSTRACT: we demonstrate that 3' end tag profiling vi deep sequencing is a powerful approach to mesure allele-specific expression genome-wide. examination of gene expression in A. thaliana, A. lyrata and the F1 hybrid

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Marnik Vuylsteke

PROVIDER: E-GEOD-28211 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Quantification of allele-specific expression patterns in Arabidopsis by tag profiling

Project description:we demonstrate that 3' end tag profiling vi deep sequencing is a powerful approach to mesure allele-specific expression genome-wide.

2014-03-28 | GSE28211 | GEO

Allele-specific expression between Arabidopsis genus

Project description:We analyzed allele-specific expression (ASE) in leaf and floral tissues of F1 interspecific hybrids generated between the two closely related species of Arabidopsis thaliana and Arabidopsis lyrata with a whole-genome SNP tiling array (AtSNPtile1).

2011-07-27 | GSE29037 | GEO

Allele-specific expression between Arabidopsis genus

2011-07-26 | E-GEOD-29037 | biostudies-arrayexpress

Allele specific expression showing the cis-regulation of Pvt1 and Myc in mouse

Project description:RNAseq of neural progenitor cell lines from hybrid F1 mouse.

2018-05-31 | GSE106194 | GEO

mRNA samples in Allele Specific Expression study

Project description:Col-0 and Van-0 total RNA were mixed at 1:1. Total RNA also extracted from F1 hybrid samples from Col x Van and Van x Col. PolyA RNA were purified and double-strand cDNA were synthesized, followed by bioprime random labeling. A total of 16ug labelled products were hybridized to AtSNPtile1. cis regulatory effect was identified as allele specific expression in F1 hybrids. Composite trans regulatory effect was detected as deviation between parental expression and F1 hybrids expression.

2009-08-15 | GSE16506 | GEO

mRNA samples in Allele Specific Expression study

2010-05-06 | E-GEOD-16506 | biostudies-arrayexpress

Expression array from mature leaves in the genus Arabidopsis

Project description:We compared the expression between inter-specific hybrids (A. thaliana-A. lyrata, A. thaliana-A. halleri) and mid parent values of their parental lines. Mature leaves in A. thaliana (Col), A. lyrata ssp. lyrata, A. halleri ssp. gemmifera and interspecific hybrid between A. thaliana and A. lyrata and between A. thaliana and A. halleri

2013-09-29 | E-GEOD-23318 | biostudies-arrayexpress

Arabidopsis thaliana, Arabidopsis lyrata, and their hybrid

Project description:Arabidopsis thaliana, Arabidopsis lyrata, and the F1 hybrid Epigenomics

| PRJNA360049 | ENA

Hierarchical Analysis of Multi-mapping RNA-Seq Reads Improves the Accuracy of Allele-specific Expression

Project description:RNA-seq experiment on reciprocal F1 hybrid cross between two diverse mouse strains NOD/ShiLtJ and PWK/PhJ to study the extent of Allele-specific expression (ASE) and the cause of ASE.

2017-07-30 | GSE101815 | GEO

Quantification of allele-specific expression patterns in Arabidopsis by tag profiling

Project description:Quantification of allele-specific expression patterns in Arabidopsis by tag profiling

| PRJNA139657 | ENA