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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Dehong chicken blood samples: Control vs. 6 chicken blood samples belonging to 3 different breeds

ABSTRACT: Copy number variation profiles comparing control female Dehong chicken blood DNA with 3 different chicken breeds (white Leghorn, Cobb broiler, and Dou chicken) blood DNA. Each test breed had one male and one female sample, for a total of 6 test DNA samples. The goal is to determine the global copy number variation profiles between chicken breeds. Female Dehong chicken DNA as reference DNA vs. 6 test chicken DNA samples.

ORGANISM(S): Gallus gallus

SUBMITTER: yanqiang wang

PROVIDER: E-GEOD-28526 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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A genome-wide survey of copy number variation regions in various chicken breeds by array comparative genomic hybridization method.

Wang Y Y Gu X X Feng C C Song C C Hu X X Li N N

Animal genetics 20120104 3

The discovery of copy number variation (CNV) in the genome has provided new insight into genomic polymorphism. Studies with chickens have identified a number of large CNV segments using a 385k comparative genomic hybridization (CGH) chip (mean length >140 kb). We present a detailed CNV map for local Chinese chicken breeds and commercial chicken lines using an Agilent 400k array CGH platform with custom-designed probes. We identified a total of 130 copy number variation regions (CNVRs; mean lengt ...[more]

PMID: 22486499

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