Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

9 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

0.3M NaCl vs Control and 2M NaCl vs Control

ABSTRACT: Transcriptional profiling of Deinococcus radiodurans comparing control untreated wild type cells with wild type cells treated with 0.3M NaCl or 2M NaCl Two-condition experiment, wild type vs. 0.3 M NaCl. Biological replicates: 4 replicates (Two replicates per array, N=8), dye-swapped, independently grown and harvested. Two-condition experiment, wild type vs. 2 M NaCl. Biological replicates: 4 replicates (Two replicates per array, N=8), dye-swapped, independently grown and harvested.

ORGANISM(S): Deinococcus radiodurans R1

SUBMITTER: Im Seong Hun

PROVIDER: E-GEOD-29516 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

0.3M NaCl vs Control and 2M NaCl vs Control

Project description:Transcriptional profiling of Deinococcus radiodurans comparing control untreated wild type cells with wild type cells treated with 0.3M NaCl or 2M NaCl

2011-05-26 | GSE29516 | GEO

Expression from Staphylococcus aureus strain USA300-lac during low and 2M NaCl exposure

2013-07-01 | GSE46383 | GEO

Transcriptional profiling of Deinococcus radiodurans comparing wild type cells with treated cells at four time points

Project description:Transcriptional profiling of Deinococcus radiodurans comparing control untreated wild type cells with wild type cells treated with 100 ÂµM CdCl2. Two-condition experiment, wild type vs. 100uM CdCl2. Biological replicates: 4 time courses (0.25, 0.5, 1, 2h), dye-swapped, independently grown and harvested. Two replicate per array.

2010-05-14 | E-GEOD-20383 | biostudies-arrayexpress

Expression from Staphylococcus aureus strain USA300-lac during low and 2M NaCl exposure

Project description:S. aureus has the propensity to survive a range of NaCl challenge conditions We used commercially available Affymetrix S. aureus GeneChips (part number 900514) to compare the gene expression properties of wild type cells during growth at no or high (2M) NaCl. S. aureus strain USA300-lac cells were grown to late exponential phase growth in the absence or presence of 2M NaCl, total bacterial RNA was isolated and subjected to GeneChip hybridization and analysis. We sought to determine the regulatory effects of high NaCl.

2013-07-01 | E-GEOD-46383 | biostudies-arrayexpress

STOP1 overexpressor vs. Col-0 and stop1 knockout vs Col-0 under control and NaCl

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings comparing overexpressor with wild type, and knockout with wild type separately under control and NaCl stress.

2018-03-01 | GSE102948 | GEO

NaCl reactors

Project description:NaCl reactors Metagenome

| PRJNA690829 | ENA

Expression data in an Arabidopsis cytokinin (CK)-signaling mutant, ahp2,3,5 and arr1,10,12, and its wild type plant (WT, Col-0) under high salinity (200 mM NaCl) and control (0 mM NaCl) conditions.

Project description:To understand the role of CK-signaling components, AHPs (His-containing phosphotransfer proteins) and type-B ARRs (response regulators) in salt stress response, we have employed transcriptional profiling of ahp2,3,5 and arr1,10,12, and it's wild type plant (WT), Col-0 under high salinity (200 mM NaCl) and control (0 mM NaCl) conditions. Agilent’s Whole Arabidopsis Gene Expression Microarray (G2519F-021169, V4, 4x44K) was used.

2017-12-31 | GSE94885 | GEO

RIMD 2210633 wild type versus vtrA or vtrB mutants

Project description:Vibrio parahaemolyticus is a Gram-negative marine bacterium. A limited population of the organisms causes acute gastroenteritis in humans. Vibrio parahaemolyticus wild type strain RIMD 2210633 compared with the mutants of VtrA and VtrB have a winged helix-turn-helix DNA binding motif that genes encoded on pathogenicity island loci, at OD600=1.0 in Luria-Bertani containing medium 0.5 % NaCl at 37˚C. Our goal is to determine the VtrA or VtrB regulon. Cohybridized wild type versus vtrA or vtrB mutants on a single array. Biological replicates: three of wild type, three of vtrA mutants and three of vtrB mutants were independently grown and harvested.

2010-07-16 | E-GEOD-17242 | biostudies-arrayexpress

Root tip: WT vs. rss3 and -NaCl vs. +NaCl

Project description:Transcriptional profiling of WT and rss3 root tips, grown in the presense or absense of 100 mM NaCl for 3 days. WT (-NaCl), WT (+NaCl), rss3 (-NaCl), rss3 (+NaCl). Three biological replicates.

2012-10-15 | E-GEOD-41442 | biostudies-arrayexpress

Transcriptional Response of Mycobacterium tuberculosis CDC1551 to treatment with 140 mM NaCl for 1 hr

Project description:To identify mediators of the osmotic stress response in Mycobacterium tuberculosis (Mtb), we performed transcriptional profiling of WT CDC1551 following treatment with 140 mM NaCl for 1 hr relative to an untreated control. 140 mM NaCl was chosen to reflect the approximate osmolarity of human plasma (i.e., 280 mOsm/L), which may be relevant during the course of infection. CDC1551 was treated with 140 mM NaCl for 1 h and compared to the same strain treated with 0 mM NaCl for 0 h. 4 biological replicates, independently grown and harvested. One replicate per array.

2013-11-15 | E-GEOD-50159 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data