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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Comparison of transcript abundance in mycelium from the rice blast fungus Magnaporthe oryzae grown in rich medium and in minimal medium using RNA-Seq

ABSTRACT: Mycelium from the rice blast fungus Magnaporthe oryzae was grown in both rich medium and under nutrient limiting conditions. Genes were identified that were more highly expressed in one condition as compared to the other. Samples were taken from mycelium grown in both complete medium and in glucose minimal medium. One replicate for each sample.

ORGANISM(S): Magnaporthe oryzae

SUBMITTER: Darren Soanes

PROVIDER: E-GEOD-30327 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae.

Soanes Darren M DM Chakrabarti Apratim A Paszkiewicz Konrad H KH Dawe Angus L AL Talbot Nicholas J NJ

PLoS pathogens 20120209 2

The rice blast fungus Magnaporthe oryzae is one of the most significant pathogens affecting global food security. To cause rice blast disease the fungus elaborates a specialised infection structure called an appressorium. Here, we report genome wide transcriptional profile analysis of appressorium development using next generation sequencing (NGS). We performed both RNA-Seq and High-Throughput SuperSAGE analysis to compare the utility of these procedures for identifying differential gene express ...[more]

PMID: 22346750

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