Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status

ABSTRACT: Bisulphite sequencing enables DNA methylation analysis of every cytosine residue. We have optimized conditions for combining chromatin immunoprecipation (ChIP) with high throughput bisulphite sequencing to study the relationship between histone modifications and DNA methylation. Paired-end bisulphite sequencing of H3K27me3-ChIP DNA for LNCaP and PrEC cell lines

ORGANISM(S): Homo sapiens

SUBMITTER: Mark Robinson

PROVIDER: E-GEOD-30558 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.

Statham Aaron L AL Robinson Mark D MD Song Jenny Z JZ Coolen Marcel W MW Stirzaker Clare C Clark Susan J SJ

Genome research 20120330 6

The complex relationship between DNA methylation, chromatin modification, and underlying DNA sequence is often difficult to unravel with existing technologies. Here, we describe a novel technique based on high-throughput sequencing of bisulfite-treated chromatin immunoprecipitated DNA (BisChIP-seq), which can directly interrogate genetic and epigenetic processes that occur in normal and diseased cells. Unlike most previous reports based on correlative techniques, we found using direct bisulfite ...[more]

PMID: 22466171

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Dataset Information

Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status

Publications

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.

Similar Datasets

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