Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Short RNAs expression profiling in SET2 cells.


ABSTRACT: We report the application of Illumina short RNA sequencing for characterization and discovery of miRNAs and moRNAs in SET2 cells carrying JAK2 V617F mutation. Short RNAs sequencing for miRNA quantification, discovery and characterisation.

ORGANISM(S): Homo sapiens

SUBMITTER: Stefania Bortoluzzi 

PROVIDER: E-GEOD-30672 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Characterization and discovery of novel miRNAs and moRNAs in JAK2V617F-mutated SET2 cells.

Bortoluzzi Stefania S   Bisognin Andrea A   Biasiolo Marta M   Guglielmelli Paola P   Biamonte Flavia F   Norfo Ruggiero R   Manfredini Rossella R   Vannucchi Alessandro M AM  

Blood 20120105 13


To gain insights into a possible role of microRNAs in myeloproliferative neoplasms, we performed short RNA massive sequencing and extensive bioinformatic analysis in the JAK2V617F-mutated SET2 cell line. Overall, 652 known mature miRNAs were detected, of which 21 were highly expressed, thus being responsible of most of miRNA-mediated gene repression. microRNA putative targets were enriched in specific signaling pathways, providing information about cell activities under massive posttranscription  ...[more]

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