Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Transcriptome profile in the human synovial MSC-aggregates


ABSTRACT: One of strategies to regenerate cartilage defect is transplantation of mesenchymal stem cells (MSCs). Improvements of therapeutic potential of MSCs are needed to achieve successful cartilage regeneration by transplantation of a limited number of cells. Aggregated culture is a popular method in ES and iPS cells to maintain or enhance their potentials. Here we investigated gene expression profile of aggregated MSCs. 621 genes were up-regulated and 409 genes were down-regulated more than 5-fold in MSC-aggregates compared with the number in MSCs in a monolayer culture. The most up-regulated gene was BMP2, which is one of the genes involved in chondrogenesis. Anti-inflammatory genes were also up-regulated in MSC-aggregates. The microarray data for selected genes were confirmed by real-time PCR. Human synovial MSCs was isolated from synovium of 3 distinct donors. The gene expression profile of MSC-aggregates cultured in hanging drop for 3days was compared with that of MSCs in a monolayer culture.

ORGANISM(S): Homo sapiens

SUBMITTER: Akihiro Umezawa 

PROVIDER: E-GEOD-31980 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2012-05-13 | GSE31980 | GEO
2015-09-30 | E-MTAB-3795 | biostudies-arrayexpress
2015-12-19 | E-GEOD-76158 | biostudies-arrayexpress
2022-02-23 | PXD009077 | Pride
2019-01-01 | GSE109567 | GEO
2013-09-05 | E-GEOD-46989 | biostudies-arrayexpress
2022-02-17 | PXD027486 | Pride
2013-01-28 | E-GEOD-43803 | biostudies-arrayexpress
2020-05-27 | PXD015386 | Pride
2010-11-01 | E-GEOD-18879 | biostudies-arrayexpress