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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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X-QTL performed on wild-type and sup35 (C653R) BY x RM segregants in various growth conditions

ABSTRACT: Genotyping pools of wildtype(wt) or sup35-C653R(sup35) BYxRM segregants after growth on YPD (control) or YPD+drug-of-interest(selection) 10 Growth conditions tested are control (YPD alone), and YPD plus the following drugs: Chlorpromazine, CoCl2, Cycloheximide, Diamide, E6berbamine, Ethanol, H2O2, Neomucin, and Tunicamycin. Two-condition experiment, control vs selection. 6 biological replicates for control and two biological replicates for each selection included.

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Noorossadat Torabi

PROVIDER: E-GEOD-33817 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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X-QTL performed on wild-type and sup35 (C653R) BY x RM segregants in various growth conditions

Project description:Genotyping pools of wildtype(wt) or sup35-C653R(sup35) BYxRM segregants after growth on YPD (control) or YPD+drug-of-interest(selection) 10 Growth conditions tested are control (YPD alone), and YPD plus the following drugs: Chlorpromazine, CoCl2, Cycloheximide, Diamide, E6berbamine, Ethanol, H2O2, Neomucin, and Tunicamycin.

2011-12-01 | GSE33817 | GEO

Transcription profiling by tiling array of Saccharomyces cerevisiae segregants spores obtained from a cross of the yeast strains S96 and YJM789.

Project description:Transcription profile in YPD media of 48 segregants spores obtained from a cross of the yeast strains S96 and YJM789. These spores are a subset of those published by Mancera et al, Nature, 2008. Two CEL files were mislabelled: eQTL_080822_spore_38B.CEL and eQTL_080826_spore_21C.CEL, actually spores 24A and 8D respectively. The correct spore IDs are in the sample annotation (under StrainOrLine).

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Long-term exposure of Candida glabrata to human monocyte-derived macrophages, with long-term medium growth controls

Project description:Candida glabrata were kept within human moncoyte-derived macrophages (MDM) for up to seven days to investigate the transcriptome of long-term residence within phagosomes. Samples were taken after 6h and 1, 2, 4, and 7 days. To control for general starvation, long-term exposure data for the growth media YPD, SD, and RPMI (with serum) were included. Experiments were performed as a common reference design, with log-phase YPD growth as Cy3-labeled reference for all arrays.

2023-05-31 | E-MTAB-11801 | biostudies-arrayexpress

RNA-Seq of Saccharomyces cerevisiae cells carrying different YRR1 alleles in response to 4-nitroquinoline-N-oxide (4NQO) and to glycerol as the sole carbon source

Project description:In this study, we constructed three isogenic strains of S96 yrr1Î? background (its native YRR1 gene was knocked out) carrying three different YRR1 alleles, YRR1_S96, YRR1_YJM789 and YRR1_S96-I775E, respectively. We then conducted RNA deep sequencing (RNA-Seq) on the three strains grown in Yeast Peptone Dextrose medium (YPD), YPD + 4NQO and Yeast Peptone glycerol medium (YPglycerol). RNA-Seq was performed in biological duplicates on S96 cells carrying three different YRR1 alleles grown in YPD, YPD + 4NQO, YPglycerol

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Expression data from Saccharomyces cerevisiae strains deleted for the THSC/TREX-2 subunits Thp1, Sac3 and Sus1

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Comparison of the transcriptome of the ethanol adapted yeast and control at 10% ethanol

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2010-05-15 | E-GEOD-13757 | biostudies-arrayexpress

RNA sequencing of pheromone stimulated and unstimulated MATa and MATM-NM-1 Saccharomyces cerevisiae

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A Comparative Analysis of the Transcriptome of Hypoxia and Inflammation in Swan 71 Human Trophophoblast Cells: Its Implications in Preeclampsia

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The expression profile under cooper sulfate treatment

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2011-08-25 | E-GEOD-31661 | biostudies-arrayexpress

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