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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Dramatic effects of social behavior on gene regulation in rhesus macaques [Cell type_expression]

ABSTRACT: Analysis of gene expression differences in relationship to dominance rank in female rhesus macaques. RNA obtained from 4 cell populations (helper T cells, cytotoxic T cells, monocytes, and B cells) from isolated peripheral blood mononuclear cells sampled from 5 adult female rhesus macaques across 5 different social groups and 5 different dominance ranks [dominance ranks : 1 = high, 5 = low]

ORGANISM(S): Macaca mulatta

SUBMITTER: Jenny Tung

PROVIDER: E-GEOD-34127 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Dramatic effects of social behavior on gene regulation in rhesus macaques [Individual_expression]

Project description:Analysis of gene expression differences in relationship to dominance rank in female rhesus macaques. RNA obtained from isolated peripheral blood mononuclear cells from 49 adult female rhesus macaques of dominance ranks 1 (high) to 5 (low) across 10 social groups. Total 100 samples = (47 individuals X 2 replicates) + (2 individuals X 3 replicates)

2012-02-01 | E-GEOD-33090 | biostudies-arrayexpress

Dramatic effects of social behavior on gene regulation in rhesus macaques

Project description:This SuperSeries is composed of the following subset Series: GSE33090: Dramatic effects of social behavior on gene regulation in rhesus macaques [Individual_expression] GSE34127: Dramatic effects of social behavior on gene regulation in rhesus macaques [Cell type_expression] GSE34128: Dramatic effects of social behavior on gene regulation in rhesus macaques [Bisulfite_seq] Refer to individual Series

2012-02-01 | E-GEOD-34129 | biostudies-arrayexpress

Dramatic effects of social behavior on gene regulation in rhesus macaques [Bisulfite seq]

Project description:These data are a component of a larger study investigating differences in gene regulation in relationship to rhesus macaque dominance rank. These data compare DNA methylation levels between individuals of different rank on a genome-wide scale using bisulfite sequencing DNA from peripheral blood mononuclear cells sampled from 3 high ranking individuals and 3 low ranking individuals (all adult female rhesus macaques)

2012-02-01 | E-GEOD-34128 | biostudies-arrayexpress

Dramatic effects of social behavior on gene regulation in rhesus macaques [Individual_expression]

Project description:Analysis of gene expression differences in relationship to dominance rank in female rhesus macaques.

2012-02-01 | GSE33090 | GEO

Dramatic effects of social behavior on gene regulation in rhesus macaques [Cell type_expression]

Project description:Analysis of gene expression differences in relationship to dominance rank in female rhesus macaques.

2012-02-01 | GSE34127 | GEO

Gene expression data from primate postnatal brain in prefrontal cortex: time course

Project description:Gene expression changes determine functional differentiation during development and are associated with functional decline during aging. While developmental changes are tightly regulated, regulation of aging changes is not well established. To assess the regulatory basis of age-related changes and investigate the mechanism of regulatory transition between development and aging, we measured mRNA and microRNA expression patterns in brains (superior frontal gyrus) of humans and rhesus macaques over the entire speciesâ lifespan. We find that in both species, developmental and aging changes overlap in the course of lifetime with many changes found at the late age initiating in early childhood. Human post-mortem brain samples from the superior frontal gyrus region of the prefrontal cortex were collected. The age ranges of the indibiual in human covered its whole life span fom newborn to death. RNA extracted from the dissected tissue was hybridized to AffymetrixÂ® Human Gene 1.0 ST arrays. Rhesus macaque post-mortem brain samples from the superior frontal gyrus region of the prefrontal cortex were collected. The age ranges of the indibiual in rhesus macaque covered the whole life span fom newborn to death. RNA extracted from the dissected tissue was hybridized to AffymetrixÂ® Human Gene 1.0 ST arrays.

2010-06-24 | E-GEOD-17757 | biostudies-arrayexpress

miRNA expression data from rhesus macaque testes: time course

Project description:Small RNA including microRNA (miRNA) and Piwi-interacting RNA (piRNA) play important roles in germline maintenance and maturation in wide variety of species. Relatively little however is known about role played by miRNA in male germline maturation in humans and closely related primate species. Here we focused on rhesus macaques as a model species closely related to humans to study small RNA expression in testis samples throughout postnatal development and maturation. We observe clear transition in miRNA and piRNA expression resulting in the overall increase of piRNA expression levels and corresponding decrease in miRNA expression. Unexpectedly, this transition takes place at approximately one year of age – far earlier then rhesus macaque sexual maturation occurring at 4-5 years of age. Notably, contradictory to the overall trend of expression decline, a group of 29 miRNA showed marked expression increase in macaque testis at approximately five years of age – the time interval associated with sexual maturation. Keywords: miRNA piRNA Age Series Rhesus macaque post-mortem testicle samples were collected. The age ranges of the indibiual in rhesus macaque covered the whole life span fom newborn to death.

2013-03-05 | E-GEOD-44820 | biostudies-arrayexpress

Quantification of gene expression from primate tissue samples

Project description:We have quantified gene expression in five tissues (brain, heart, kidney, liver and testis) from humans, chimpanzees and rhesus macaques using the Illumina NlaIII Digital Gene Expression (DGE) protocol. This dataset extends a previous microarray study by Khaitovich et al. (Khaitovich et al. 2005) with the rhesus macaque outgroup and complements other previously generated tissue transcriptome profiles from primates (Enard et al. 2002; Khaitovich et al. 2006; Somel et al. 2009; Babbitt et al. 2010; Blekhman et al. 2010; Wetterbom et al. 2010). contributor: Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, D-04103 Leipzig, Germany Samples were obtained from brain (pre-frontal cortex), heart, kidney, liver, and testis tissues of male humans, chimpanzees and rhesus macaques. Illumina NlaIII DGE libraries for all samples were generated in tissue batches, randomizing species in library preparation and sequencing. Human samples originate from different, probably unrelated, individuals for each tissue. For chimpanzees and rhesus macaques the libraries for all tissues come from the same set of individuals and among these are individuals related at the half- and full-sibling level. Due to limited access to samples, the analysis could not be limited to individuals of similar age. Human individuals vary between 5 and 88 years of age, chimpanzees between 6 years and 35 years of age and rhesus macaques between 3 and 9 years of age.

2013-10-01 | E-GEOD-50782 | biostudies-arrayexpress

Gene and miRNA expression data from primate postnatal brain in prefrontal cortex: time course

Project description:This SuperSeries is composed of the following subset Series: GSE17757: Gene expression data from primate postnatal brain in prefrontal cortex: time course GSE18012: miRNA expression data from human postnatal brain in prefrontal cortex: time course GSE18013: miRNA expression data from rhesus macaque postnatal brain in prefrontal cortex: time course Refer to individual Series

2010-06-09 | E-GEOD-18069 | biostudies-arrayexpress

Multiomic Profiling of Iron Deficient Infant Monkeys Reveals Alterations in Neurologically Important Biochemicals in Serum and CSF Prior to the Onset of Anemia

Project description:Background: The effects of iron deficiency anemia (IDA) during infancy extend beyond the hematologic compartment and include short- and long-term adverse effects on many tissues including the brain. However, biomarkers of iron-dependent brain health are lacking in humans. Prior analyses in rhesus infants indicated abnormal serum and cerebral spinal fluid (CSF) multiomic profiles both prior to and during IDA, characterized by alterations suggestive of hepatic and brain metabolic dysfunction, and impaired energy metabolism. Objective: To determine whether serum and CSF biomarkers of iron deficiency (ID)-induced metabolic dysfunction are concordant in the pre/early anemic stage of ID in a nonhuman primate model of infantile IDA. Methods: Paired serum and CSF specimens were collected from iron-sufficient (IS; n = 12) and ID (n = 7) rhesus infants at 4-months (preanemic period) and 6-months (anemic period) of age. Hematological, metabolomic, and proteomic profiles were generated via HPLC/MS at both timepoints to discover serum biomarkers of ID-induced brain metabolic dysfunction. Results: We identified and quantified 227 metabolites and 205 proteins in serum. Abnormalities indicating altered liver function, lipid dysregulation, and increased acute phase proteins were present in ID. In CSF, we measured 210 metabolites and 1,560 proteins with ID infants displaying metabolomic and proteomic changes indicating disrupted synaptogenesis. Concurrent systemic and CSF proteomic and metabolomic changes were present in the preanemic and anemic periods. Conclusions: Multiomic serum and CSF profiling uncovered pathways disrupted by ID in both the preanemic and anemic stages of infantile IDA, including evidence for liver metabolic dysfunction and acute phase responses. Parallel changes observed in serum and CSF potentially provide measurable serum biomarkers that reflect at-risk brain processes early during ID.

2022-03-18 | PXD028275 | Pride

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