Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptome sequencing of Foxtail millet Setaria italica for different tissues


ABSTRACT: Transcriptome sequencing of Foxtail millet Setaria italica (Zhang-gu) for different tissues. Four RNA pools were created corresponding to four different tissues: root, leaf, stem, spica (tassel) at developmental stage, then each pool was sequenced.

ORGANISM(S): Setaria italica

SUBMITTER: Zhijun Zheng 

PROVIDER: E-GEOD-36391 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a C(4) biofuel. It is a model system for other biofuel grasses, including switchgrass and pearl millet. We produced a draft genome (∼423 Mb) anchored onto nine chromosomes and annotated 38,801 genes. Key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum including two reshuff  ...[more]

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