Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

13 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sg1-sg3-Studying the transcriptional consequences of a QTL for shoot growth (SG3, SG1). Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3).

ABSTRACT: ra09-01_qtlleafgrowth - sg1-sg3 - What are the transcriptional consequences of the allelic contrast at SG3, SG1 and EGO3 loci mapped for its effect on shoot growth and identified at the gene level - Plants were grown in the in vitro conditions where we have mapped and cloned the concerned QTL and which allows us to see the phenotype linked to the segregation of the natural alleles. We are comparing 2 genotypes descending from a RIL from the Bur x Col RIL set, homozygous and identical everywhere in the genome except for the 23.4 kb at SG1 loci where one genotype is Bur (97.4 and 175.4) and the other is Col (97.1 and 175.1). 4 dye-swap - genotype comparison

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Soubigou-Taconnat Ludivine

PROVIDER: E-GEOD-36656 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

rnai tor time course - The signalization way TOR/PTEN in Arabidopsis

Project description:gnp_blan06_torpten - rnai tor time course - The impact of the TOR pathway on growth and stress responses. Modification of translational and transcriptional profiles in Tor-inducible RNAi mutants and identification of TOR targets. 28 dye-swaps - normal vs. rnai mutant comparison.

2011-01-07 | E-GEOD-25701 | biostudies-arrayexpress

drn/drn-l expressing cells vs non-expressing cells-Embryonic patterning in Arabidopsis thaliana

Project description:adt05-04_drn - drn/drn-l expressing cells vs non-expressing cells - DRN targets - In primordia timing (pt) mutant background DRN::erGFP transgenic cell culture (somatic embryos suitable to regenerate plants) has been protoplasted and protoplasts have been sorted for GFP+ and GFP- cells. Total RNA was extracted and sent to Evry for comparison (samples DRN a,b,c). DRN-L::erGFP transgenic cell culture has been protoplasted and protoplasts have been sorted for GFP+ and GFP- cells (samples DRN-L-2-1 and DRN-L-3-1). Keywords: null 5 dye-swap - CATMA arrays

2010-04-30 | E-GEOD-19799 | biostudies-arrayexpress

uprt overexpression - Transcriptomic analysis of overexpression of the URPT gene

Project description:adt10-02_35suprt - uprt overexpression. Transcriptomic analysis of the overexpression of UPTR. 8 dye-swaps. Normal vs. transgenic comparison.

2011-02-01 | E-GEOD-26847 | biostudies-arrayexpress

oct07-DNA methylation and small RNAs

Project description:rs09-10_fwa - oct07. Impact of loss of DNA methylation and small interference RNAs (siRNAs) on gene expression. Mutants impaired for the DNA methylation maintenance pathway and for the RNA interference machinery were compared to mutants simultaneously impaired for both machineries to estimate their impact on genome activity. 8 dye-swaps. Gene knockout.

2011-04-01 | E-GEOD-26843 | biostudies-arrayexpress

wt vs. mutants 09-DNA methylation and small RNAs

Project description:rs09-10_fwa - wt vs mutants 09. Impact of loss of DNA methylation and small interference RNAs (siRNAs) in gene expression. Determination of the genes misregulated upon ectopic expression of the FWA imprinted gene. Mutants impaired for the DNA methylation maintenance pathway and RNA interference machinery were compared to mutants simultaneously impaired for both. Impact of FWA and SDC ectopic expression. 15 dye-swaps. fwa-d, gain of function epimutation, gene knock-in (transgenic), gene knockout.

2011-03-31 | E-GEOD-26844 | biostudies-arrayexpress

2 doses of ionising radiations (x-rays) -Transcriptomic analysis of effects of ionising radiation on Arabidopsis thaliana.

Project description:au09-03_gamma-irradiation - 2 doses of ionising radiations (x-rays) - Metabolic pathways involved in the response of plants to ionising radiation treatment. - Arabidopsis thaliana (Col-0) seeds were grown in Petri dishes under sterile conditions until they had 2-rosette-leaves (on average 10 days). Then they received a dose of 10 or 40 gray of X-ray (Faxitron HP). Plant were harvested 2 and 26 hours after irradiation, immediatly frozen and stored at -80°C until RNA extraction (Rneasy plant mini Kit, Qiagen) . Experiment was carried in duplicates and a non irradiated control was done for each time. 8 dye-swap - dose response,time course

2012-02-25 | E-GEOD-35942 | biostudies-arrayexpress

silencing mutants-Transcriptome analysis of silencing mutants and endogenous hairpin KO insertion.

Project description:rs09-06_silencing-muntants - silencing mutants - Find endogenous targets of SDE3, SDE5 and IR71. - Lines IR71 KO n°3, smd8#25, sde3 (Col-0), sde5 (Col-0), Suc-SUL(Col-0) and Col-0 were grown for 11 days on MS solid medium, seedlings were then transferred in MS liquid medium and harvested 2.5 days after. Keywords: genotype comparaison 8 dye-swap - CATMA arrays

2010-09-14 | E-GEOD-23915 | biostudies-arrayexpress

gene profiling of turnip crinkle virus (tcv) sirna-Gene profiling of Turnip Crinkle Virus (TCV) siRNA in A.thaliana

Project description:rs10-05_tcv - gene profiling of turnip crinkle virus (tcv) sirna - 1. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA in A.thaliana? 2. There are also differentially regulated during an evolution and a fitness process? - This is a plant evolution project on TCV in which, the biological questions are: 1. What are the genes (including miRNA precursors) that are differentially regulated in Col0 and dcl234 mutant in wt conditions? 2. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA in Col0 and dcl234 mutant? 3. There are also differentially regulated between the plant generations 1 (G1) and 11 (G11)? 4. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA after fitness experiment? 24 dye-swap - gene knock out,treated vs untreated comparison

2012-03-31 | E-GEOD-29372 | biostudies-arrayexpress

gemsupv2-PLASMAR - Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants

Project description:au09-04_geminisilsup2 - gemsupv2 - Determine the level of expression in transgenic plants expressing geminviral gene silencing suppressors. One transgenic line of Arabidopsis overexpressing the geminiviral silencing suppressor V2 was grown in addition to a control, and their total RNA was extracted in order to study their genetic expression profiles. 3 dye-swaps - gene knock-in (transgenic).

2011-01-08 | E-GEOD-26399 | biostudies-arrayexpress

Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants (gemsupv2ts-7)

Project description:au10-09_gemsupv2ts-7 - gemsupv2ts-7 - Determine the level of expression in transgenic plants expressing geminiviral gene silencing suppressors. - One transgenic line of Arabidopsis overexpressing the geminiviral silencing suppressor V2TS was grown in adition to a control and their total RNA was extracted in order to study its genetic expression profile. 3 dye-swap - gene knock in (transgenic)

2011-07-31 | E-GEOD-30766 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data