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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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DNA methylation profiling in breast cancer discordant identical twins

ABSTRACT: We obtained a comprehensive DNA methylation profile of 15 breast cancer discordant twins, using the high resolution Infinium HumanMethylation450 BeadChip platform (450K, Illumina), previously established to reliably detect methylation changes of more than 450,000 CpG sites. To provide insight into the temporal and causal relationships and predictive potential, samples from breast cancer patients before (7) and after diagnosis (8) were also analyzed. Using whole blood from 15 twin pairs discordant for breast cancer and high-resolution (450k) DNA methylation analysis we identified 403 differentially methylated CpG sites including known and novel potential breast cancer genes. 30 Samples

ORGANISM(S): Homo sapiens

SUBMITTER: Antonio Gómez

PROVIDER: E-GEOD-37965 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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DNA methylation profiling in breast cancer discordant identical twins identifies DOK7 as novel epigenetic biomarker.

Heyn Holger H Carmona F Javier FJ Gomez Antonio A Ferreira Humberto J HJ Bell Jordana T JT Sayols Sergi S Ward Kirsten K Stefansson Olafur A OA Moran Sebastian S Sandoval Juan J Eyfjord Jorunn E JE Spector Tim D TD Esteller Manel M

Carcinogenesis 20121010 1

Using whole blood from 15 twin pairs discordant for breast cancer and high-resolution (450K) DNA methylation analysis, we identified 403 differentially methylated CpG sites including known and novel potential breast cancer genes. Confirming the results in an independent validation cohort of 21 twin pairs determined the docking protein DOK7 as a candidate for blood-based cancer diagnosis. DNA hypermethylation of the promoter region was also seen in primary breast cancer tissues and cancer cell l ...[more]

PMID: 23054610

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