Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum


ABSTRACT: Using a tiled whole-genome microarray, we found that 58.2% of Tribolium castaneum genes are maternally loaded into eggs. Comparison of known Drosophila melanogaster maternal genes to our results showed widespread conservation of maternal function with T. castaneum. We also found many T. castaneum genes with previously identified gender or tissue specific expression were also maternally loaded into eggs. The microarray design also allowed the detection of 2315 and 4060 novel transcriptionally active regions greater in length than 100 bp in unfertilized and fertilized T. castaneum eggs, respectively. The primary objective of this study was to identify expressed regions of the Tribolium castaneum genome in unfertilized and fertilized eggs using a whole-genome tiled microarray. The whole RNA of 3 samples of virgin laid eggs and 3 samples of fertilized eggs were compaired.

ORGANISM(S): Tribolium castaneum

SUBMITTER: Jacqueline Lopez 

PROVIDER: E-GEOD-38245 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum.

Preuss Kevin M KM   Lopez Jacqueline A JA   Colbourne John K JK   Wade Michael J MJ  

BMC genomics 20121127


<h4>Background</h4>Maternal RNAs play a critical role in early development. Variation in the diversity and levels of maternally derived gene transcripts may be central to the origin of phenotypic novelty -- a longstanding problem in evolution and development. By studying maternal transcriptomes within and between divergent species, a better understanding of the evolutionary forces acting on maternal RNA allocation is possible.<h4>Results</h4>We present the first maternal transcriptome of the red  ...[more]

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