Identification of a p-coumarate degradation regulon in Rhodopseudomonas palustris using Xpression, an integrated tool for prokaryotic RNA-seq data processing

ABSTRACT: High-throughput sequencing of cDNA prepared from RNA, an approach known as RNA-seq, is coming into increasing use as a method for transcriptome analysis. Despite its many advantages, widespread adoption of the technique has been hampered by a lack of easy-to-use, integrated, open source tools for analyzing the nucleotide sequence data that are generated. Here we describe Xpression, an integrated tool for processing prokaryotic RNA-seq data. The tool is easy to use and is fully automated. It performs all essential processing tasks including nucleotide sequence extraction, alignment, quantification, normalization and visualization. Importantly, Xpression supports multiplexed and strand-specific nucleotide sequence data. It extracts and trims specific sequences from files and separately quant

ORGANISM(S): Rhodopseudomonas palustris CGA009

SUBMITTER: Somsak Phattarasukol 

PROVIDER: E-GEOD-39025 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress