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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling time series of E. coli growth in suspension and biofilm cultures

ABSTRACT: Temporal expression of biofilm and suspension samples from E. coli wild type cultured on glass wool in LB medium. Samples removed after 4, 7, 15, and 24 hr of culturing.

ORGANISM(S): Escherichia coli

SUBMITTER: Thomas Wood

PROVIDER: E-GEOD-3905 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Temporal gene-expression in Escherichia coli K-12 biofilms.

Domka Joanna J Lee Jintae J Bansal Tarun T Wood Thomas K TK

Environmental microbiology 20070201 2

Analysis of the temporal development of Escherichia coli K-12 biofilms in complex medium indicates the greatest differential gene expression between biofilm and suspension cells occurred in young biofilms at 4 and 7 h (versus 15 and 24 h). The main classes of genes differentially expressed (biofilm versus biofilm and biofilm versus suspension cells) include 42 related to stress response (e.g. cspABFGI), 66 related to quorum sensing (e.g. ydgG, gadABC, hdeABD), 20 related to motility (e.g. flgBCE ...[more]

PMID: 17222132

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