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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptome sequencing of the rock pigeon, Columba livia

ABSTRACT: Deep sequencing of mRNA from the rock pigeon Analysis of ploy(A)+ RNA of different specimens: heart and liver from the rock pigeon (Danish Tumbler, Oriental Frill and Racing)

ORGANISM(S): Columba livia

SUBMITTER: tan hao

PROVIDER: E-GEOD-39333 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Genomic diversity and evolution of the head crest in the rock pigeon.

Shapiro Michael D MD Kronenberg Zev Z Li Cai C Domyan Eric T ET Pan Hailin H Campbell Michael M Tan Hao H Huff Chad D CD Hu Haofu H Vickrey Anna I AI Nielsen Sandra C A SC Stringham Sydney A SA Hu Hao H Willerslev Eske E Gilbert M Thomas P MT Yandell Mark M Zhang Guojie G Wang Jun J Wang Jun J

Science (New York, N.Y.) 20130131 6123

The geographic origins of breeds and the genetic basis of variation within the widely distributed and phenotypically diverse domestic rock pigeon (Columba livia) remain largely unknown. We generated a rock pigeon reference genome and additional genome sequences representing domestic and feral populations. We found evidence for the origins of major breed groups in the Middle East and contributions from a racing breed to North American feral populations. We identified the gene EphB2 as a strong ca ...[more]

PMID: 23371554

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Transcriptome sequencing of the rock pigeon, Columba livia

Project description:Deep sequencing of mRNA from the rock pigeon

2013-02-03 | GSE39333 | GEO

First Transcriptomic insight into the working muscles of racing pigeons during a competition flight

Project description:The currently known homing pigeon is a result of a sharp one-sided selection for flight characteristics focused on speed, endurance, and spatial orientation. This has led to extremely well-adapted athletic phenotypes in racing birds. Here, we identify genes and pathways contributing to exercise adaptation in sport pigeons by applying next-generation transcriptome sequencing of m.pectoralis muscle samples, collected before and after a 300 km competition flight. The analysis of differentially expressed genes pictured the central role of pathways involved in fuel selection and muscle maintenance during flight, with a core set of genes: ARTN, NREP, CAV3, SLC25A30, SLC2A11. Variations in these genes may therefore be exploited for genetic improvement of the racing pigeon population towards specific categories of competition flights.

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The transcriptome sequencing of yak (Bos grunniens)

Project description:Deep sequencing of mRNA from 6 organs of yak (Bos grunniens) Analysis of ploy(A)+ RNA of brain,heart,liver,lung,spleen, and stomach of yak (Bos grunniens)

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2011-04-20 | E-GEOD-15742 | biostudies-arrayexpress

Reduced expression of RhoE promotes ROCK-dependent invasion in transformed human fibroblasts

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