Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salmonella wild type in LB, 2mM indole until OD1 and 2mM indole for 15 minutes

ABSTRACT: Transcriptional profiling of Salmonella Typhimurium SL1344 wild type grown to OD600=1 in LB alone or in LB supplemented with 2mM Indole, or with 2mM indole for 15 min (called shock). The goal is to determine Salmonella response to indole at different time points. Different conditions were tested. The reference on each hybridisation is the chromosome DNA of the wild type strain. 4 replicates each for LB and LB + Indole, 6 replicates for indole shock.

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

SUBMITTER: Corinne Appia-Ayme

PROVIDER: E-GEOD-39760 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Salmonella wild type and mutant sdiA in LB and 2mM indole

Project description:Transcriptional profiling of Salmonella Typhimurium SL1344 wild type and deletion of the sdiA regulator-encoding gene grown to OD600=1 in LB alone or in LB supplemented with 2mM indole. The goal is to determine Salmonella response to indole and to define the SdiA-regulated genes in these conditions. 4 different conditions tested (wild type in LB, wild type in LB + 2mM indole, sdiA mutant in LB, sdiA mutant in LB + 2mM indole), 4 replicates for each condition. The reference on each hybridisation is the chromosomal DNA of the wild type strain.

2013-01-30 | E-GEOD-36805 | biostudies-arrayexpress

Salmonella wild type in LB, 2mM indole until OD1 and 2mM indole for 15 minutes

Project description:Transcriptional profiling of Salmonella Typhimurium SL1344 wild type grown to OD600=1 in LB alone or in LB supplemented with 2mM Indole, or with 2mM indole for 15 min (called shock). The goal is to determine Salmonella response to indole at different time points.

2013-01-30 | GSE39760 | GEO

Salmonella wild type and mutant sdiA in LB and 2mM indole

2013-01-30 | GSE36805 | GEO

Salmonella wild type and mutant baeR in LB and tungstate

Project description:Transcriptional profiling of Salmonella Typhimurium SL1344 wild type and deleted of the response regulator encoding gene baeR grown to OD600=1 in LB alone or in LB supplemented with 20mM of Sodium Tungstate. The goal is to determine Salmonella response to tungstate and to define the BaeR regulated genes in this conditions. 4 differents conditions tested, the reference on each hybridisation is the chromosomique DNA of the wild type strain. 3 replicates for the wild type on LB, 3 replicates for the baeR on LB, 3 replicates for the wild type on LB+ tungstate and 5 replicates for baeR on LB+tungstate.

2011-08-29 | E-GEOD-28861 | biostudies-arrayexpress

Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Project description:Salmonella wild type in LB, 2mM indole until OD1 and 2mM indole for 15 minutes

| PRJNA171591 | ENA

E. coli K-12 mutants yceP, trpE, and tnaA biofilm cell 24 hr for indole paper

Project description:Gene expression of (i) K-12 yceP biofilms upon addition of 600 µM indole in LB glu medium, (ii) K-12 biofilms due to the trpE mutation in LB glu medium, and (iii) K-12 biofilms due to the tnaA mutation in LB medium. Keywords: indole effect and cell type comparison

2007-05-01 | GSE4562 | GEO

Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Project description:Salmonella wild type and mutant sdiA in LB and 2mM indole

| PRJNA156831 | ENA

P. aeruginosa and indole and 7-hydroxyindole

2008-11-21 | GSE10065 | GEO

P. aeruginosa and indole and 7-hydroxyindole

Project description:We used DNA microarrays to investigate the impact of indole and 7-hdroxyindole on P. aeruginosa PAO1.For the microarray experiments, 10 g glass wool (Corning Glass Works, Corning, N.Y.) were used to form biofilms in 250 mL in 1 L Erlenmeyer shake flasks which were inoculated with overnight cultures of P. aeruginosa PAO1 diluted that were 1:100. For P. aeruginosa with 7-hydroxyindole and indole, 500 uM 7-hydroxyindole in 250 uL DMF, 1000 uM indole in 250 uL DMF, or 250 uL DMF alone were added to cells grown in LB. The cells were shaken at 250 rpm and at 37oC for 7 h to form biofilms on the glass wool, and RNA was isolated from the biofilm cells. Keywords: comparison with E. coli signal indole on P. aeruginosa PAO1 For the microarray experiments, 10 g glass wool (Corning Glass Works, Corning, N.Y.) were used to form biofilms in 250 mL in 1 L Erlenmeyer shake flasks which were inoculated with overnight cultures of P. aeruginosa PAO1 diluted that were 1:100. For P. aeruginosa with 7-hydroxyindole and indole, 500 uM 7-hydroxyindole in 250 uL DMF, 1000 uM indole in 250 uL DMF, or 250 uL DMF alone were added to cells grown in LB. The cells were shaken at 250 rpm and at 37oC for 7 h to form biofilms on the glass wool, and RNA was isolated from the biofilm cells.

2010-10-23 | E-GEOD-10065 | biostudies-arrayexpress

T1E vs T1E Indole

Project description:Transcriptional profile of Pseudomonas putida DOT-T1E grown in the presence of indole (300 uM) compared with the same cells grown in absence of indole.

2013-03-20 | E-MEXP-3819 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data