Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

MiR-146a promotes the initiation and progression of melanoma by activating Notch signaling


ABSTRACT: Oncogenic mutations in BRAF and NRAS occur in 70% of melanomas. Here we identify a microRNA, miR-146a, that is highly upregulated by oncogenic BRAF and NRAS. Expression of miR-146a increases the ability of human melanoma cells to proliferate in culture and form tumors in mice, whereas knockdown of miR-146a has the opposite effects. We show these oncogenic activities are due to miR-146a targeting the NUMB mRNA, a repressor of Notch signaling. Previous studies have shown that pre-miR-146a contains a single nucleotide polymorphism (C>G rs2910164). We find that the ability of pre-miR-146a/G to activate Notch signaling and promote oncogenesis is substantially higher than that of pre-miR-146a/C. Analysis of melanoma cell lines and matched patient samples indicates that during melanoma progression pre-miR-146a/G is enriched relative to pre-miR-146a/C, resulting from a C-to-G somatic mutation in pre-miR-146a/C. Collectively, our results reveal a central role for miR-146a in the initiation and progression of melanoma. WI-38 cells were either infected with BRAFV600E or Empty retroviral vectors and small RNA were prepared from these cells. As an additional control, WI-38 cells were serum starved and used to generate quiscent cells, which were also used to prepase small RNA. The small RNA were then used to generate small RNA library and were used on Illumina genome analyzer.

ORGANISM(S): Homo sapiens

SUBMITTER: narendra wajapeyee 

PROVIDER: E-GEOD-39983 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

miR-146a promotes the initiation and progression of melanoma by activating Notch signaling.

Forloni Matteo M   Dogra Shaillay Kumar SK   Dong Yuying Y   Conte Darryl D   Ou Jianhong J   Zhu Lihua Julie LJ   Deng April A   Mahalingam Meera M   Green Michael R MR   Wajapeyee Narendra N  

eLife 20140218


Oncogenic mutations in BRAF and NRAS occur in 70% of melanomas. In this study, we identify a microRNA, miR-146a, that is highly upregulated by oncogenic BRAF and NRAS. Expression of miR-146a increases the ability of human melanoma cells to proliferate in culture and form tumors in mice, whereas knockdown of miR-146a has the opposite effects. We show these oncogenic activities are due to miR-146a targeting the NUMB mRNA, a repressor of Notch signaling. Previous studies have shown that pre-miR-146  ...[more]

Similar Datasets

2014-02-18 | E-GEOD-39294 | biostudies-arrayexpress
2014-02-18 | GSE39983 | GEO
2014-02-18 | GSE39294 | GEO
2014-06-30 | E-GEOD-52783 | biostudies-arrayexpress
2016-03-18 | GSE77090 | GEO
2019-02-07 | GSE126137 | GEO
2013-12-21 | E-GEOD-43016 | biostudies-arrayexpress
2020-06-29 | PXD015939 | Pride
2016-06-14 | E-GEOD-78078 | biostudies-arrayexpress
2013-09-10 | GSE50619 | GEO