Time series of Methanococcus maripaludis MM901, a shift from a H2-excess and N-limiting condition to a H2-limited and N-excess condition in chemostats (growth rate held constant)

ABSTRACT: Methanogens catalyze the critical, methane-producing step (called methanogenesis) in the anaerobic decomposition of organic matter and have applications in carbon-neutral fuel production. Here, we present the first predictive model of global gene regulation of methanogenesis in a hydrogenotrophic methanogen, Methanococcus maripaludis. We generated a comprehensive list of genes (protein-coding and non-coding) for M. maripaludis through integrated analysis of the transcriptome structure and a newly constructed Peptide Atlas. The environment and gene-regulatory influence network (EGRIN) model of the strain was constructed from a compendium of transcriptome data that was collected over 100 different steady-state and time course experiments that were performed in chemostats, or batch cultures,

ORGANISM(S): Methanococcus maripaludis S2

SUBMITTER: Sung Ho Yoon 

PROVIDER: E-GEOD-42126 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress