Spatially restricted position-dependent implications of lamin A promoter occupancy on gene activity (ChIPs and MeDips)

ABSTRACT: Interactions between the nuclear lamina (NL) and chromatin are thought to occur through large lamin association domains (LADs) and correlate with gene repression in these domains. We show that binding of lamin A/C (LMNA) to promoters occurs on discrete domains that are associated with distinct transcriptional outputs. Chromatin immunoprecipitation identifies thousands of LMNA-bound promoters, primarily linked to signaling functions. LMNA often occupies narrow domains on promoters, yet LMNA-bound promoters are often contiguous. LMNA-bound genes are overall repressed, but repression correlates with co-enrichment in repressive histone marks rather than LMNA occupancy per se. Genes marked by LMNA and H3K4me3 escape LMNA-associated repression in the absence of repressive histone marks. Position

ORGANISM(S): Homo sapiens

SUBMITTER: Philippe Collas 

PROVIDER: E-GEOD-42522 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress