Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Haloarcula hispanica wild-type strain cultured in different media: MG vs 168

ABSTRACT: Transcriptional profiling of Haloarcula hispanica wild-type strain cultured in different media comparing MG medium with 168 medium. H. hispanica wild-type strain can accumulate PHBV in MG medium, while can not in 168 medium. Goal was to explore the PHA biosynthesis and its impact on central metabolism in H. hispanica. Total RNA from MG and 168 were used to generate target cDNA, and then hybridized to 8*15K Haloarcula hispanica genome array genechips, representing about 3800 genes.

ORGANISM(S): Haloarcula hispanica

SUBMITTER: Hailong Liu 

PROVIDER: E-GEOD-42798 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

Proteome reference map of Haloarcula hispanica and comparative proteomic and transcriptomic analysis of polyhydroxyalkanoate biosynthesis under genetic and environmental perturbations.

Liu Hailong H   Luo Yuanming Y   Han Jing J   Wu Jinhua J   Wu Zhenfang Z   Feng Deqin D   Cai Shuangfeng S   Li Ming M   Liu Jingfang J   Zhou Jian J   Xiang Hua H  

Journal of proteome research 20130125 3

Many haloarchaea are known as polyhydroxyalkanoates (PHAs) producers, but a global and integrated view of the PHA biosynthesis is still lacking in this group of archaea. In this study, a combined proteomic and transcriptomic approach was employed in Haloarcula hispanica, a model haloarchaeon that accumulates poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) under nutrient-limiting conditions with excess carbon source. First, a comprehensive proteome reference map was established for H. hispani  ...[more]

Similar Datasets

Transcriptomics Haloarcula hispanica wild-type strain cultured in different media: MG vs 168
2013-01-22 | GSE42798 | GEO
Transcriptomics Genes differentially expressed Haloarcula hispanica strains: PHB (M-NM-^TphaEC mutant) vs 960 (wild type)
2013-01-22 | E-GEOD-42799 | biostudies-arrayexpress
Transcriptomics Proteome reference map of Haloarcula hispanica and comparative proteomic and transcriptomic analysis of polyhydroxyalkanoate biosynthesis under genetic and environmental perturbations
2013-01-22 | E-GEOD-42800 | biostudies-arrayexpress
Transcriptomics Bacillus subtilis 168 cells: ccpN mutant and ccpN-yqfL double mutant analysis
2008-07-01 | E-GEOD-11937 | biostudies-arrayexpress
Transcriptomics The YmdB phosphodiesterase is a global regulator of biofilm-specific mRNA levels in Bacillus subtilis
2013-12-11 | E-GEOD-39142 | biostudies-arrayexpress
Transcriptomics Bacillus subtilis 168 moenomycin stimulon
2011-06-17 | E-GEOD-30001 | biostudies-arrayexpress
Transcriptomics Comparison of Bacillus subtilis wild type and cshA mutant at exponential versus stationary phase
2012-11-26 | E-GEOD-36877 | biostudies-arrayexpress
Transcriptomics RNA-seq of Bacillus subtilis (i) sigI-rsgI knock-out strain, (ii) rsgI disrupted strain, and (iii) wt strains during growth at 52°C and 37°C
2018-06-26 | E-MTAB-6314 | biostudies-arrayexpress
Transcriptomics Bacillus subtilis 168 moenomycin stimulon
2011-06-17 | GSE30001 | GEO
Transcriptomics Transcriptome analysis of miniBacillus PG10 and its parental strain B. subtilis 168
2022-05-11 | GSE169409 | GEO