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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Interrogating translating RNAs and cell-type specific gene expression using Cre-activated translating ribosome affinity purification

ABSTRACT: We characterize a Cre-activated TRAP allele (Rosa26fsTRAP) to show that endothelium-specific activation of Rosa26fsTRAP identifies endothelial cell enriched transcripts, and that cardiomyocyte-restricted TRAP is a useful means to identify genes that are differentially expressed in cardiomyocytes in a disease model. We also show that TRAP is an effective means to study translational regulation, and we several nuclear-encoded mitochondrial genes are under strong translational control. These RNA-seq data show that the TRAP strategy and the Rosa26fsTRAP allele will be useful tools to probe cell type specific transcriptomes, and to study translational regulation. Study TRAP RNA and total RNA in two cases: heart specific tissues, Banding or Sham, using RNA-seq technology.

ORGANISM(S): Mus musculus

SUBMITTER: Fei Gu

PROVIDER: E-GEOD-45152 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Pi3kcb links Hippo-YAP and PI3K-AKT signaling pathways to promote cardiomyocyte proliferation and survival

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2015-02-20 | E-GEOD-57719 | biostudies-arrayexpress

Interrogating translating RNAs and cell-type specific gene expression using Cre-activated translating ribosome affinity purification

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2013-08-20 | GSE45152 | GEO

Translating transcriptome of cancer cells in situ in mesenchymal-rich tumor microenvironment

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2015-02-20 | E-GEOD-57717 | biostudies-arrayexpress

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2008-11-14 | E-GEOD-13379 | biostudies-arrayexpress

BET Bromodomains Mediate Transcriptional Pause Release in Heart Failure [ChIP-Seq]

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2013-08-01 | E-GEOD-48914 | biostudies-arrayexpress

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