Genome-wide profiling of microRNAs target transcripts in sweet orange
Ontology highlight
ABSTRACT:
ORGANISM(S): Citrus sinensis
SUBMITTER: Liu Yuanlong
PROVIDER: E-GEOD-46764 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
Publications
Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange.
Liu Yuanlong Y Wang Lun L Chen Dijun D Wu Xiaomeng X Huang Ding D Chen Lingling L Li Li L Deng Xiuxin X Xu Qiang Q
BMC genomics 20140820
<h4>Background</h4>In plants, microRNAs (miRNAs) regulate gene expression mainly at the post-transcriptional level. Previous studies have demonstrated that miRNA-mediated gene silencing pathways play vital roles in plant development. Here, we used a high-throughput sequencing approach to characterize the miRNAs and their targeted transcripts in the leaf, flower and fruit of sweet orange.<h4>Results</h4>A total of 183 known miRNAs and 38 novel miRNAs were identified. An in-house script was used t ...[more]
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Project description:miRNAs-mediated gene silencing pathway plays vital roles in plant development, abiotic and biotic stress responses. Here, we carried out a high-throughput sequencing approach to identify miRNAs in leaves and flowers of sweet orange. Consequently we identified genome-wide 183 known miRNAs and 38 novel miRNAs. Small RNA sequencing of the leaves and flowers in sweet orange
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