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Genome-wide identification of KANADI1 target genes

ABSTRACT: A combination of ChIP-Seq and genome-wide mRNA expression profiling using tilling arrays was used to identify genes bound and regulated by the KANADI1 transcription factor. A. thaliana KAN1 ChIP-seq w. control, 2 replicates This submission represents ChIP-Seq component of study.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Felix Ott

PROVIDER: E-GEOD-48081 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Genome-wide identification of KANADI1 target genes.

Merelo Paz P Xie Yakun Y Brand Lucas L Ott Felix F Weigel Detlef D Bowman John L JL Heisler Marcus G MG Wenkel Stephan S

PloS one 20131014 10

Plant organ development and polarity establishment is mediated by the action of several transcription factors. Among these, the KANADI (KAN) subclade of the GARP protein family plays important roles in polarity-associated processes during embryo, shoot and root patterning. In this study, we have identified a set of potential direct target genes of KAN1 through a combination of chromatin immunoprecipitation/DNA sequencing (ChIP-Seq) and genome-wide transcriptional profiling using tiling arrays. T ...[more]

PMID: 24155946

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