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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Expression data from Oryza sativa 3037 (wild-type) and sd37 (mutant) seedlings

ABSTRACT: We characterized a rice (Oryza sativa L ssp. indica cultivar 3037) semi-dwarf mutant sd37, in which CYP96B4 gene (Cytochrome P450 96B subfamily) was identified as the target gene by map-based cloning and complementation test. A point mutation in CYP96B4 leads to a substitution of Thr to Lys in the SRS2 region. The sd37 leaves, panicles and seeds are all smaller compared with those of wild-type, and histological analysis showed that the decreased cell number was the main reason for the dwarf phenotype. We used microarrays to detail the global programme of gene expression underlying cellularisation and identified distinct classes of up- and down- regulated genes during this process. Two-week old seedlings of sd37 and wild-type rice plants were selected and three biological replicates were generated and evaluated.

ORGANISM(S): Oryza sativa Indica Group

SUBMITTER: zhang jie

PROVIDER: E-GEOD-48593 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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The rice semi-dwarf mutant sd37, caused by a mutation in CYP96B4, plays an important role in the fine-tuning of plant growth.

Zhang Jie J Liu Xiaoqiang X Li Shuyu S Cheng Zhukuan Z Li Chuanyou C

PloS one 20140203 2

Plant cytochrome P450 has diverse roles in developmental processes and in the response to environmental cues. Here, we characterized the rice (Oryza sativa L ssp. indica cultivar 3037) semi-dwarf mutant sd37, in which the gene CYP96B4 (Cytochrome P450 96B subfamily) was identified and confirmed as the target by map-based cloning and a complementation test. A point mutation in the SRS2 domain of CYP96B4 resulted in a threonine to lysine substitution in the sd37 mutant. Examination of the subcellu ...[more]

PMID: 24498428

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