Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

7 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparative genomic and transcriptomic analysis of Wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen

ABSTRACT: We sequenced mRNA from Wangiella dermatitidis at two pH conditions (2.5 and 6), including three biological replicates of each sample. Examination of transcript level changes in reponse to low pH stress.

ORGANISM(S): Exophiala dermatitidis

SUBMITTER: Christina Cuomo

PROVIDER: E-GEOD-51646 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Comparative genomic and transcriptomic analysis of Wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen

Project description:We sequenced mRNA from Wangiella dermatitidis at two pH conditions (2.5 and 6), including three biological replicates of each sample.

2014-01-27 | GSE51646 | GEO

M. tuberculosis Rv3263 Knockout

Project description:We determine gene expression profile for the knockout of Rv3263 (DNA Methyltransferase) and compared to wildtype M. tuberculosis. Two RNA-Seq datasets are included: wildtype (H37Rv_SS1) and knockout (delta_Rv3263)

2013-11-21 | E-GEOD-52551 | biostudies-arrayexpress

From glacier to sauna: RNAseq of the human pathogen Exophiala dermatitidis

Project description:We report the transcriptome response of Exophiala dermatitidis submitted to different temperature conditions

2015-06-30 | GSE63785 | GEO

From glacier to sauna: RNAseq of the human pathogen Exophiala dermatitidis

Project description:We report the transcriptome response of Exophiala dermatitidis submitted to different temperature conditions 2 Temperature conditions (45C, 1C), 2 exposition length (1 hour, 1 week) compared to optimal condition (37C)

2015-06-30 | E-GEOD-63785 | biostudies-arrayexpress

RNA-seq mouse HNF4a KO

Project description:Illumina RNA-seq data of liver samples from Mus musculus domesticus HNF4A knockout and wild-type controls

2014-11-01 | E-MTAB-2484 | biostudies-arrayexpress

Black-boxing and cause-effect power.

Project description: Not available

| S-EPMC5933815 | biostudies-literature

Comparative genomic and transcriptomic analysis of wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen.

Project description: Not available

| S-EPMC4059230 | biostudies-literature

ChIP-seq analysis of SREB during yeast phase growth of Blastomyces dermatitidis at 37oC

Project description:ChIP-seq analysis was used to identify B. dermatitidis genes bound by the GATA transcription factor encoded by SREB during growth as yeast at 37oC

2015-07-01 | GSE68680 | GEO

The response of the melanized yeast Exophiala dermatitidis to gamma radiation exposure

Project description:The melanized yeast Exophiala dermatitidis is resistant to many environmental stresses, and is used as a model for understanding the diverse roles of melanin in fungi. To further our understanding resistance mechanism of E. dermatitidis to acute γ-radiation exposure and whether melanin plays a role in this process, we performed RNA-seq on WT and the melanin deficient mutant Δpks1 cultures exposed to γ-radiation at the dose of 1000 Gy, which resulted in ~50% cell deaths in both strains. We observed a dramatic transcriptomic response to γ-radiation that mobilizes pathways involved in morphological development, protein degradation, and DNA repair, and is unaffected by the presence of melanin.

2019-12-19 | GSE142318 | GEO

Virion Structure of Black Queen Cell Virus, a Common Honeybee Pathogen.

Project description: Not available

| S-EPMC5331821 | biostudies-literature