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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part

ABSTRACT: A comparative assessment between both technologies, RNASeq and microarrays to detect differential expression in Arabidopsis transcriptome. The sequencing approach use High-throughput sequencing on different Solexa technologies (GAII,HiSeq2000 multiplex or not) Wild type samples were analyzed from 2 tissus (flower buds and leaves) which have a very contrasted transcriptomic profile (i.e very high number of genes differentially expressed). The RNA was extracted from 2 tissus Flower Buds and Leaves from Arabidopsis. The associated GEO series with array part is GSE45345

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Véronique BRUNAUD

PROVIDER: E-GEOD-53673 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part

Project description:A comparative assessment between both technologies, RNASeq and microarrays to detect differential expression in Arabidopsis transcriptome. The sequencing approach use High-throughput sequencing on different Solexa technologies (GAII,HiSeq2000 multiplex or not) Wild type samples were analyzed from 2 tissus (flower buds and leaves) which have a very contrasted transcriptomic profile (i.e very high number of genes differentially expressed).

2014-06-01 | GSE53673 | GEO

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Project description:cat-seq - bf_vs_f - A comparative assessment of the Arabidopsis sequencing approach High-throughput sequencing cDNA GAII or HiSeq2000 sequenceur (technology Solexa) and data on CATMA array hybridation (version 6). These different characteristics will be studied through the analysis of control samples but also samples from mutants in genes coding for cytosolic or nuclear PPR proteins - The two selected samples are the flower buds and leaves of Arabidopsis. Two organs known as the transcriptome is very different. This experience will serve as reference 2 dye-swap - organ comparison

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bf_vs_f-Comparative Arabidopsis Transcriptome -Sequencing

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2012-09-30 | GSE34188 | GEO

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