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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Regulatory RNA Apela Is a Component of a Negative Feedback Loop Regulating p53-Mediated Apoptosis in Embryonic Stem Cells (I)

ABSTRACT: p53-repressed transcripts have recently been shown to play important roles in various biological processes, such as stem cell differentiation and cancer. We identified a transcript named Apela that is repressed by p53 and highly expressed in mouse ES cells. To see which transcripts are affected by Apela knockdown, we performed gene expression microarray using Affymetrix Gene ST 1.0 array. Two short hairpin RNAs (shRNAs) targeting Apela were used to decrease the RNA levels of Apela to about 20% of the control (a shRNA target luciferase, shLuc). We designed two lentivirus-based shRNAs against Apela and used shRNA against luciferase as a control. Lentiviruses were made and used to transduced mouse ES cells. For each shRNA, three repeats were done.

ORGANISM(S): Mus musculus

SUBMITTER: Jing Huang

PROVIDER: E-GEOD-54355 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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An Apela RNA-Containing Negative Feedback Loop Regulates p53-Mediated Apoptosis in Embryonic Stem Cells.

Li Mangmang M Gou Hongfeng H Tripathi Brajendra K BK Huang Jing J Jiang Shunlin S Dubois Wendy W Waybright Tim T Lei Ming M Shi Jianxin J Zhou Ming M Huang Jing J

Cell stem cell 20150430 6

Maintaining genomic integrity is of paramount importance to embryonic stem cells (ESCs), as mutations are readily propagated to daughter cells. ESCs display hypersensitivity to DNA damage-induced apoptosis (DIA) to prevent such propagation, although the molecular mechanisms underlying this apoptotic response are unclear. Here, we report that the regulatory RNA Apela positively regulates p53-mediated DIA. Apela is highly expressed in mouse ESCs and is repressed by p53 activation, and Apela deplet ...[more]

PMID: 25936916

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