Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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RNase J is required for processing of a small number of RNAs in Rhodobacter sphaeroides


ABSTRACT: A comparative RNA-seq approach between R. sphaeroides 2.4.1 wild type and an RNase J deletion strain 2.4.1M-bM-^HM-^Frnj revealed the accumulation of different mRNA fragments in the mutant. The structural characteristics of these RNA fragments suggest that RNase J is responsible for the decay of degradation intermediates that cannot serve as substrates for the 3M-BM-4-to-5M-BM-4 exoribonucleases. Total RNA from exponentially grown cultures (OD660 0,4) of 2.4.1 wild type and 2.4.1M-bM-^HM-^Frnj has been isolated in triplicates using the hot phenol method and prepared for sequencing on a Illumina Genome Analyzer IIx machine.

ORGANISM(S): Rhodobacter sphaeroides 2.4.1

SUBMITTER: Konrad FM-CM-6rstner 

PROVIDER: E-GEOD-54750 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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