Expression of orthologs of ribosome biogenesis factors in vegetative and reproductive tissues in Solanum lycopersicum

ABSTRACT: Ribosome biogenesis is a major cellular processes involving a large inventory of proteinaceous and RNA cofactors. Recent bioinformatics approaches discovered a large but not complete overlap of the inventory between yeast, mammals and plants. We re-inspected the complexity of ribosome biogenesis factors (RBFs) by assigning co-orthologs to each protein family in the A. thaliana and S. lycopersicum genomes. We realized that about 25% of all analyzed RBFs in the two plant genomes are encoded by more than one gene. The majority is expressed in leaves and anthers of tomato as determined by next generation sequencing (NGS). For the analysis of NGS data we developed a software pipeline M-bM-^@M-^XCRACPipeM-bM-^@M-^Y. This pipeline is designed to be very flexible with respect to genome selection a

ORGANISM(S): Solanum lycopersicum

SUBMITTER: Enrico Schleiff 

PROVIDER: E-GEOD-56610 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress