Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation
Ontology highlight
ABSTRACT:
ORGANISM(S): Zea mays
SUBMITTER: Shawn Thatcher
PROVIDER: E-GEOD-57337 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
Publications
Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation.
Thatcher Shawn R SR Zhou Wengang W Leonard April A Wang Bing-Bing BB Beatty Mary M Zastrow-Hayes Gina G Zhao Xiangyu X Baumgarten Andy A Li Bailin B
The Plant cell 20140923 9
Alternative splicing enhances transcriptome diversity in all eukaryotes and plays a role in plant tissue identity and stress adaptation. To catalog new maize (Zea mays) transcripts and identify genomic loci that regulate alternative splicing, we analyzed over 90 RNA-seq libraries from maize inbred lines B73 and Mo17, as well as Syn10 doubled haploid lines (progenies from B73 × Mo17). Transcript discovery was augmented with publicly available data from 14 maize tissues, expanding the maize transc ...[more]
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