Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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MRNA and miRNA expression profiles for fresh frozen periampullary adenocarcinomas (pancreatobiliary and intestinal type) and adjacent normal tissues. [miRNA]

ABSTRACT: To study the molecular signatures of mRNAs and miRNAs which can potentially act as a prognostic biomarkers in pancreatobiliary and intestinal types of periampullary adenocarcinomas Total RNA was isolated from 10 x 20 µm sections of 83 fresh frozen tumor samples for miRNA expression profiling. A total of 51 PDAC, 8 bile duct adenocarcinoma, 8 ampulla of pancreatobiliary tye, 7 ampulla of intestinal type, 9 duodenum sample and 6 adjacent normal samples were used. These samples were analysed by microarray analysis using the 60K agilent platform. The expression profiles was RMA normalized for miRNA expression data. Filtering of controls, unannotated genes and low expressed probes was done.

ORGANISM(S): Homo sapiens

SUBMITTER: Vandana Sandhu 

PROVIDER: E-GEOD-60978 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Molecular signatures of mRNAs and miRNAs as prognostic biomarkers in pancreatobiliary and intestinal types of periampullary adenocarcinomas.

Sandhu V V   Bowitz Lothe I M IM   Labori K J KJ   Lingjærde O C OC   Buanes T T   Dalsgaard A M AM   Skrede M L ML   Hamfjord J J   Haaland T T   Eide T J TJ   Børresen-Dale A-L AL   Ikdahl T T   Kure E H EH  

Molecular oncology 20141219 4

Periampullary adenocarcinomas include four anatomical sites of origin (the pancreatic duct, bile duct, ampulla and duodenum) and most of them fall into two histological subgroups (pancreatobiliary and intestinal). Determining the exact origin of the tumor is sometimes difficult, due to overlapping histopathological characteristics. The prognosis depends on the histological subtype, as well as on the anatomical site of origin, the former being the more important. The molecular basis for these dif  ...[more]

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