Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of a S96xSK1 yeast cross and its pool of spores.


ABSTRACT: To dissect local regulation into cis and trans contribution, we measured allelic differential expression in a hybrid cross of two yeast strains and compared it against allelic differential expression in a pool of spores of the same cross. RNA- and DNA-seq of a diploid S. cerevisiae hybrid and its haploid spores.

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Daniel Bader 

PROVIDER: E-GEOD-61553 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Negative feedback buffers effects of regulatory variants.

Bader Daniel M DM   Wilkening Stefan S   Lin Gen G   Tekkedil Manu M MM   Dietrich Kim K   Steinmetz Lars M LM   Gagneur Julien J  

Molecular systems biology 20150129 1


Mechanisms conferring robustness against regulatory variants have been controversial. Previous studies suggested widespread buffering of RNA misexpression on protein levels during translation. We do not find evidence that translational buffering is common. Instead, we find extensive buffering at the level of RNA expression, exerted through negative feedback regulation acting in trans, which reduces the effect of regulatory variants on gene expression. Our approach is based on a novel experimenta  ...[more]

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