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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of S. cerevisiae histone mutants H3,K4,79R and H3,K4,36,79R (at 0, 6, and 9 hours) Mutations

ABSTRACT: This SuperSeries is composed of the following subset Series:; GSE6319: Histone H3 K4,79R; GSE6326: Histone H3 K4,36,79R 0 hr; GSE6327: Histone H3 K4,36,79R 6 hr; GSE6328: Histone H3 K4,36,79R 9 hr Experiment Overall Design: Refer to individual Series

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: John Wyrick

PROVIDER: E-GEOD-6331 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Transcription profiling of S. cerevisiae H3 K4,36,79R mutant vs wild type in glucose media

Project description:Total RNA from two replicate cultures of wild-type and mutant strains was isolated and the expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,36,79R mutant. Cells were grown in galactose media and then shifted to glucose media for 9 hours to give the 9 hour time point. Experiment Overall Design: Histone H3 K4,36,79R time course. Cells were grown in galactose media and then shifted to glucose media, which repressed the expression of wild-type histone H3, leaving the histone H3 K4,36,79R mutant as the sole source of histone H3 protein in the cell. Total RNA was isolated from replicate cultures of wild-type and mutant histone H3 at various time points after the shift to glucose media (0, 6, and 9 hours). Expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,36,79R mutant.

2008-06-14 | E-GEOD-6328 | biostudies-arrayexpress

Transcription profiling of S. cerevisiae Histone H3 K4,36,79R mutant 6 hr

Project description:Total RNA from two replicate cultures of wild-type and mutant strains was isolated and the expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,36,79R mutant. Cells were grown in galactose media and then shifted to glucose media for 6 hours to give the 6 hour time point. Experiment Overall Design: Histone H3 K4,36,79R time course. Cells were grown in galactose media and then shifted to glucose media, which repressed the expression of wild-type histone H3, leaving the histone H3 K4,36,79R mutant as the sole source of histone H3 protein in the cell. Total RNA was isolated from replicate cultures of wild-type and mutant histone H3 at various time points after the shift to glucose media (0, 6, and 9 hours). Expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,36,79R mutant.

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Histone H3 K4,36,79R 18 hr

Project description:Total RNA from two replicate cultures of the mutant strain were isolated and the expression profiles were determined using Affymetrix arrays. Comparisons between the samples and the wild-type control allow the identification of genes regulated by H3 K4,36,79R mutant. Cells were grown in galactose media and then shifted to glucose media for 18 hours to give the 18 hour time point Keywords: repeat Histone H3 K4,36,79R time course. Cells were grown in galactose media and then shifted to glucose media, which repressed the expression of wild-type histone H3, leaving the histone H3 K4,36,79R mutant as the sole source of histone H3 protein in the cell. Total RNA was isolated from replicate cultures of wild-type and mutant histone H3 at various time points after the shift to glucose media (0, 6, 9, 12, and 18 hours). Expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,36,79R mutant.

2013-05-25 | E-GEOD-6320 | biostudies-arrayexpress

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Project description:Total RNA from two replicate cultures of the mutant strain were isolated and the expression profiles were determined using Affymetrix arrays. Comparisons between the samples and the wild-type control allow the identification of genes regulated by H3 K4,36,79R mutant. Cells were grown in galactose media and then shifted to glucose media for 12 hours to give the 12 hour time point. Keywords: repeat Histone H3 K4,36,79R time course. Cells were grown in galactose media and then shifted to glucose media, which repressed the expression of wild-type histone H3, leaving the histone H3 K4,36,79R mutant as the sole source of histone H3 protein in the cell. Total RNA was isolated from replicate cultures of wild-type and mutant histone H3 at various time points after the shift to glucose media (0, 6, 9, 12, and 18 hours). Expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,36,79R mutant.

2013-05-25 | E-GEOD-6329 | biostudies-arrayexpress

Transcription profiling of Saccharomyces Histone H3 K4,36,79R mutant 0 hr

Project description:Total RNA from two replicate cultures of wild-type and mutant strains was isolated and the expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,36,79R mutant. Cells were grown in galactose media to give the 0 hour timepoint. Experiment Overall Design: Histone H3 K4,36,79R time course. Cells were grown in galactose media and then shifted to glucose media, which repressed the expression of wild-type histone H3, leaving the histone H3 K4,36,79R mutant as the sole source of histone H3 protein in the cell. Total RNA was isolated from replicate cultures of wild-type and mutant histone H3 at various time points after the shift to glucose media (0, 6, and 9 hours). Expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,36,79R mutant.

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Transcription profiling of S. cerevisiae mutant and wild type strains to identify genes regulated by the histone H3 K4,9,14,18,23,27,36,79G mutant

2009-01-14 | E-GEOD-10933 | biostudies-arrayexpress

Transcription profiling of S. cerevisiae Histone H3 K4,79R mutant vs. wild type

Project description:Total RNA from three replicate cultures of wild-type and mutant strains was isolated and the expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H3 K4,79R mutant. Experiment Overall Design: Comparison of genes whose mRNA levels are affected in a histone H3 K4,79R mutant yeast strain compared to wild-type yeast strain.

2008-06-14 | E-GEOD-6319 | biostudies-arrayexpress

Histone H3 K4,36,79G

2008-12-30 | E-GEOD-10930 | biostudies-arrayexpress

Transcription profiling of S. cerevisiae H2B^3-32 mutants to investigate the role of hstone H2B N-terminal domain in genome wide transcription

Project description:Histone H2B was mutated to give H2B^3-32. Total RNA from three replicate cultures of wild-type and mutant was isolated and the expression profiles were determined using Affymetrix arrays. Comparisons between the sample groups allow the identification of genes regulated by H2B N-terminal domain. Experiment Overall Design: mutant compared to wild-type, 3 replicates

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2008-06-12 | E-GEOD-3804 | biostudies-arrayexpress

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