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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Genome-wide analysis of gemin2 mutant transcriptome

ABSTRACT: The goal of this study was to compare the transcriptional profile (RNA-seq) of gemin2 Arabidopsis mutant with wild type plants grown under continuous light conditions WT and gemin2 mutant plants were grown for nine days under continuous white light at 22 degrees centigrades and the transcriptional profile of these plants was analyzed using RNA-seq.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Marcelo Yanovsky

PROVIDER: E-GEOD-63405 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms.

Schlaen Rubén Gustavo RG Mancini Estefanía E Sanchez Sabrina Elena SE Perez-Santángelo Soledad S Rugnone Matías L ML Simpson Craig G CG Brown John W S JW Zhang Xu X Chernomoretz Ariel A Yanovsky Marcelo J MJ

Proceedings of the National Academy of Sciences of the United States of America 20150713 30

The mechanisms by which poikilothermic organisms ensure that biological processes are robust to temperature changes are largely unknown. Temperature compensation, the ability of circadian rhythms to maintain a relatively constant period over the broad range of temperatures resulting from seasonal fluctuations in environmental conditions, is a defining property of circadian networks. Temperature affects the alternative splicing (AS) of several clock genes in fungi, plants, and flies, but the spli ...[more]

PMID: 26170331

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Genome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of prmt5 and prmt4a;4b Arabidopsis mutants with their respective wild type plants grown under continous light conditions WT, prmt5 and prmt4a;4b mutant plants were grown together with their respective wild type plants for two weeks under continuous white light at 22 degrees centigrades and the transcriptional profile of these plants was analyzed using RNA-seq.

2015-04-03 | E-GEOD-62024 | biostudies-arrayexpress

Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure]

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of wild type and gemin2 Arabidopsis mutants plants exposed to 10ºC for 0, 1 and 24 hours. WT and gemin2 mutant plants were grown for nine days under continuous white light at 22 degrees centigrades or exposed for 1 or 24 h to 10ºC on the 9th day, before harvesting. Then the transcriptional profile of these plants was analyzed using RNA-seq.

2015-08-03 | E-GEOD-63406 | biostudies-arrayexpress

Genome-wide analysis of Dengue virus 2 infected cells

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2016-08-09 | E-GEOD-84285 | biostudies-arrayexpress

HSF1 drives a transcriptional program distinct from heat shock to support highly malignant human cancers [ChIP-Seq]

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Derivation of pre-X inactivation human embryonic stem cells under physiological oxygen concentrations

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2010-05-28 | E-GEOD-21141 | biostudies-arrayexpress

Promoter proximal pausing and its regulation by c-Myc in embryonic stem cells: ChIP-Seq

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2010-08-09 | E-GEOD-23455 | biostudies-arrayexpress

HSF1 drives a transcriptional program distinct from heat shock to support highly malignant human cancers

Project description:This SuperSeries is composed of the following subset Series: GSE38232: HSF1 drives a transcriptional program distinct from heat shock to support highly malignant human cancers [gene expression] GSE38901: HSF1 drives a transcriptional program distinct from heat shock to support highly malignant human cancers [ChIP-Seq] Refer to individual Series

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