Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

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Expression in Intergenic Regions

ABSTRACT: Contains a row for each intergenic region in each sample, indicating whether our analysis called a window within the region "present" or "absent" in the sample. Intergenic regions are regions containing neither annotated genes nor intergenic clusters. Region coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163).

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Rosa Cheuk 

PROVIDER: E-GEOD-639 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Empirical analysis of transcriptional activity in the Arabidopsis genome.

Yamada Kayoko K   Lim Jun J   Dale Joseph M JM   Chen Huaming H   Shinn Paul P   Palm Curtis J CJ   Southwick Audrey M AM   Wu Hank C HC   Kim Christopher C   Nguyen Michelle M   Pham Paul P   Cheuk Rosa R   Karlin-Newmann George G   Liu Shirley X SX   Lam Bao B   Sakano Hitomi H   Wu Troy T   Yu Guixia G   Miranda Molly M   Quach Hong L HL   Tripp Matthew M   Chang Charlie H CH   Lee Jeong M JM   Toriumi Mitsue M   Chan Marie M H MM   Tang Carolyn C CC   Onodera Courtney S CS   Deng Justine M JM   Akiyama Kenji K   Ansari Yasser Y   Arakawa Takahiro T   Banh Jenny J   Banno Fumika F   Bowser Leah L   Brooks Shelise S   Carninci Piero P   Chao Qimin Q   Choy Nathan N   Enju Akiko A   Goldsmith Andrew D AD   Gurjal Mani M   Hansen Nancy F NF   Hayashizaki Yoshihide Y   Johnson-Hopson Chanda C   Hsuan Vickie W VW   Iida Kei K   Karnes Meagan M   Khan Shehnaz S   Koesema Eric E   Ishida Junko J   Jiang Paul X PX   Jones Ted T   Kawai Jun J   Kamiya Asako A   Meyers Cristina C   Nakajima Maiko M   Narusaka Mari M   Seki Motoaki M   Sakurai Tetsuya T   Satou Masakazu M   Tamse Racquel R   Vaysberg Maria M   Wallender Erika K EK   Wong Cecilia C   Yamamura Yuki Y   Yuan Shiaulou S   Shinozaki Kazuo K   Davis Ronald W RW   Theologis Athanasios A   Ecker Joseph R JR  

Science (New York, N.Y.) 20031001 5646

Functional analysis of a genome requires accurate gene structure information and a complete gene inventory. A dual experimental strategy was used to verify and correct the initial genome sequence annotation of the reference plant Arabidopsis. Sequencing full-length cDNAs and hybridizations using RNA populations from various tissues to a set of high-density oligonucleotide arrays spanning the entire genome allowed the accurate annotation of thousands of gene structures. We identified 5817 novel t  ...[more]

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