Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Genome-wide maps of chromatin state in LATS2-knockout HeLa-S3 cell

ABSTRACT: Chromatin modifying activities for construction of appropriate epigenetic landscapes by polycomb repressive complex 2 (PRC2) play an essential role in development and tumorigenesis. However, the spatiotemporal mechanisms by which PRC2 achieves diverse epigenomes for specific tissue or cellular contexts remain poorly understood. Here, we discovered that LATS2 knockout causes dysregulation of PRC2 and subsequent transcriptome changes for differentiation in both mouse and human cells. LATS2 depletion dependent dysregulation of PRC2 also effects H3K4me3 and forms negative feedback loop for maintenance of PRC2. Further analyses reveal that LATS2 on chromatin binds to EZH2 and LATS2 has ability to phosphorylate PRC2 in vitro. These LATS2 dependent H3K27me3 targets are highly induced during neurogenesis, and statistical analysis of glioblastoma multiforme reveals that LATS2-high cases show more dedifferentiated transcriptome and poor prognosis with silencing of H3K27me3 targets. These observations suggest that LATS2-mediated epigenome coordination is pivotal for development and disease, including cancer. Examination of 2 different histone modifications in parental wild-type HeLa-S3 and LATS2-knockout KO cells using Illumina HiSeq 2000.

ORGANISM(S): Homo sapiens

SUBMITTER: Daisuke Okuzaki 

PROVIDER: E-GEOD-64072 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

LATS2, a pivotal Ser/Thr kinase of the Hippo pathway, plays important roles in many biological processes. LATS2 also function in Hippo-independent pathway, including mitosis, DNA damage response and epithelial to mesenchymal transition. However, the physiological relevance and molecular basis of these LATS2 functions remain obscure. To understand novel functions of LATS2, we constructed a LATS2 knockout HeLa-S3 cell line using TAL-effector nuclease (TALEN). Integrated omics profiling of this cel  ...[more]

Similar Datasets

Transcriptomics Transcriptome profiling of TALEN-mediated LATS2 knockout HeLa-S3 cells
2016-07-26 | E-GEOD-63534 | biostudies-arrayexpress
Transcriptomics RNA-seq analysis of TALEN-mediated LATS2 knockout HeLa-S3 cells
2016-07-26 | E-GEOD-63537 | biostudies-arrayexpress
Transcriptomics RNA-seq analysis of add-back rescued TALEN-mediated LATS2 knockout HeLa-S3 cells
2016-07-26 | E-GEOD-66388 | biostudies-arrayexpress
Transcriptomics Transcriptome profiling of HeLa-S3 cells treated with siRNAs targeting LATS1 and/or LATS2
2016-07-26 | E-GEOD-63533 | biostudies-arrayexpress
Transcriptomics Transcriptome profiling of TALEN-mediated LATS2 knockout HeLa-S3 cells
2016-07-26 | GSE63534 | GEO
Transcriptomics miRNA array profiling of Lats2 deficient mouse embryonic fibroblasts
2016-07-26 | E-GEOD-63532 | biostudies-arrayexpress
Transcriptomics RNA-seq analysis of TALEN-mediated LATS2 knockout HeLa-S3 cells
2016-07-26 | GSE63537 | GEO
Genomics Genome-wide maps of chromatin state in LATS2-knockout HeLa-S3 cell
2016-07-26 | GSE64072 | GEO
Transcriptomics Transcriptome profiling of HeLa-S3 cells treated with siRNAs targeting LATS1 and/or LATS2
2016-07-26 | GSE63533 | GEO
Transcriptomics RNA-seq analysis of add-back rescued TALEN-mediated LATS2 knockout HeLa-S3 cells
2016-07-26 | GSE66388 | GEO