Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

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Transcription profiling of E. coli MG1655 and UTI89 in vitro - time series


ABSTRACT: Transcriptional expression of MG1655 and UTI89 harvested from various time points during aerobic or anaerobic growth in Luria-Bertani medium Experiment Overall Design: Transcriptional profiling time course analysis of genes shared between two different E. coli strains (after application of electronic probe mask on raw data)

ORGANISM(S): Escherichia coli

SUBMITTER: Christopher Swanson Reigstad 

PROVIDER: E-GEOD-6425 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Functional genomic studies of uropathogenic Escherichia coli and host urothelial cells when intracellular bacterial communities are assembled.

Reigstad Christopher S CS   Hultgren Scott J SJ   Gordon Jeffrey I JI  

The Journal of biological chemistry 20070514 29


Uropathogenic Escherichia coli (UPEC), the principal cause of urinary tract infection in women, colonizes the gut as well as the genitourinary tract. Studies of mice inoculated with UTI89, a sequenced isolate, have revealed a complex life cycle that includes formation of intracellular bacterial communities (IBCs) in bladder urothelial cells. To understand how UPEC adapts to life in IBCs, we have used GeneChips and/or quantitative reverse transcriptase PCR to study UTI89 recovered from the distal  ...[more]

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