Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Improved transcription and translation with L-leucine stimulation of mTORC1


ABSTRACT: Roberts syndrome (RBS) is a human developmental disorder caused by mutations in the cohesin acetyltransferase ESCO2. We previously reported that mTORC1 was inhibited and overall translation was reduced in RBS cells. Treatment of RBS cells with L-leucine partially rescued mTOR function and protein synthesis, correlating with increased cell division. In this study, we use RBS as a model for mTOR inhibition and analyze transcription and translation with ribosome profiling to determine genome-wide effects of L-leucine. The translational efficiency of many genes is increased with Lleucine in RBS cells including genes involved in ribosome biogenesis, translation, and mitochondrial function. snoRNAs are strongly upregulated in RBS cells, but decreased with L-leucine. Imprinted genes, including H19 and GTL2, are differentially expressed in RBS cells consistent with contribution to mTORC1 control. This study reveals dramatic effects of L-leucine stimulation of mTORC1 and supports that ESCO2 function is required for normal gene expression and translation. 42 samples of human fibroblast cell lines with various genotypes (wt, corrected, and esco2 mutants) are treated with l-leucine or d-leucine (control) for 3 or 24 hours. Biological replicates are present.

ORGANISM(S): Homo sapiens

SUBMITTER: Madelaine Gogol 

PROVIDER: E-GEOD-64962 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Improved transcription and translation with L-leucine stimulation of mTORC1 in Roberts syndrome.

Xu Baoshan B   Gogol Madelaine M   Gaudenz Karin K   Gerton Jennifer L JL  

BMC genomics 20160105


<h4>Background</h4>Roberts syndrome (RBS) is a human developmental disorder caused by mutations in the cohesin acetyltransferase ESCO2. We previously reported that mTORC1 signaling was depressed and overall translation was reduced in RBS cells and zebrafish models for RBS. Treatment of RBS cells and zebrafish RBS models with L-leucine partially rescued mTOR function and protein synthesis, correlating with increased cell division and improved development.<h4>Results</h4>In this study, we use RBS  ...[more]

Similar Datasets

2016-01-15 | GSE64962 | GEO
2020-06-02 | PXD016254 | Pride
2015-06-29 | E-GEOD-66809 | biostudies-arrayexpress
2011-03-01 | GSE27569 | GEO
2011-03-01 | E-GEOD-27569 | biostudies-arrayexpress
2012-11-20 | E-GEOD-39530 | biostudies-arrayexpress
2018-04-04 | GSE112643 | GEO
| PRJNA272597 | ENA
2018-07-19 | GSE113751 | GEO
2011-11-12 | E-GEOD-25627 | biostudies-arrayexpress