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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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BPTF is required for c-MYC-induced remodelling of target chromatin and transcriptional activation

ABSTRACT: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Homo sapiens

SUBMITTER: Enrique Carrillo de Santa Pau

PROVIDER: E-GEOD-65546 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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BPTF is required for c-MYC transcriptional activity and in vivo tumorigenesis.

Richart Laia L Carrillo-de Santa Pau Enrique E Río-Machín Ana A de Andrés Mónica P MP Cigudosa Juan C JC Lobo Víctor J Sánchez-Arévalo VJS Real Francisco X FX

Nature communications 20160105

c-MYC oncogene is deregulated in most human tumours. Histone marks associated with transcriptionally active genes define high-affinity c-MYC targets. The mechanisms involved in their recognition by c-MYC are unknown. Here we report that c-MYC interacts with BPTF, a core subunit of the NURF chromatin-remodelling complex. BPTF is required for the activation of the full c-MYC transcriptional programme in fibroblasts. BPTF knockdown leads to decreased c-MYC recruitment to DNA and changes in chromati ...[more]

PMID: 26729287

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BPTF is required for c-MYC-induced remodelling of target chromatin and transcriptional activation [ChIP-Seq]

Project description:The c-MYC oncogene is a key transcription factor deregulated in most human tumors. Histone marks associated with transcriptionally active genes in euchromatic islands define the set of high-affinity c-MYC targets. The mechanisms involved in their recognition by c-MYC are not known but likely involve chromatin-remodelling and chromatin-modifying complexes. Here, we show that c-MYC interacts with BPTF, a core subunit of the NURF complex that binds active chromatin. BPTF is required for the activation of the full c-MYC transcriptional programme in fibroblasts. BPTF knockdown leads to a decrease in c-MYC recruitment to DNA and to changes in chromatin accessibility. Using BPTF-null MEFs we show that BPTF is necessary for c-MYC-driven proliferation, G1-S progression, and replication stress, but not for c-MYC-driven apoptosis. Consistently, BPTF is required for the proliferation of cells driven by c-MYC, such as Burkitt lymphoma, and its expression in human cancer lines correlates with the activation of c-MYC gene signatures. Our findings point to the c-MYC-BPTF axis as a potential therapeutic target in cancer. To assess whether BPTF is required for the transcriptional activity of c-MYC, human foreskin fibroblasts (HFF) were stably transduced with the chimeric MYC-ER cDNA (HFF MYC-ER) and infected with lentiviruses coding for either control (shNt) or BPTF-targeting shRNAs. Cells were serum-starved for 2 days to achieve quiescence and then treated with 4-hydroxytamoxifen (4-OHT)

2016-01-19 | E-GEOD-65544 | biostudies-arrayexpress

BPTF is required for c-MYC-induced remodelling of target chromatin and transcriptional activation [RNA-Seq]

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Genome-wide map of GATA6 DNA binding in human CRC cells

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Gata6

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

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Transcriptional profiles by deep sequencing (RNA-seq) of in vivo-generated mouse iPSCs, in vitro-generated mouse iPSCs, and mouse ESCs

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Genome-wide map of GATA6 DNA binding in human PDAC cells

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The transcription factor GATA6 allows self-renewal of colon adenoma stem cells by repressing BMP gene expression

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Global gene expression in the adult Gata6 null mouse pancreas

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2015-02-03 | E-GEOD-47536 | biostudies-arrayexpress

The contribution of cohesin-SA1 to chromatin architecture and gene expression in two murine tissues [RNA-seq]

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