Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

High-resolution nucleosome positioning from ATAC-seq chromatin accessibility data


ABSTRACT: We describe the NucleoATAC algorithm for high-resolution nucleosome positioning and occupancy determination using ATAC-seq. ATAC-seq was performed on Saccharomyces cerevisiae and Schizosaccaromyces pombe. Nucleosomes were called for both species as well as for the human GM12878 cell line using data from GSE47753. Additionally, ATAC-seq was performed on S. cerevisiae undergoing an osmotic stress time-course and nucleosomes were called for each time point.

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: William Greenleaf 

PROVIDER: E-GEOD-66386 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2013-10-09 | E-GEOD-49572 | biostudies-arrayexpress
2011-08-14 | E-GEOD-30071 | biostudies-arrayexpress
2012-06-18 | E-GEOD-35666 | biostudies-arrayexpress
2009-04-30 | E-GEOD-13446 | biostudies-arrayexpress
2011-03-07 | E-GEOD-26452 | biostudies-arrayexpress
2016-08-02 | E-GEOD-84240 | biostudies-arrayexpress
2015-08-06 | E-GEOD-69230 | biostudies-arrayexpress
2023-01-26 | PXD039544 | Pride
2018-12-18 | E-MTAB-7035 | biostudies-arrayexpress
2013-11-12 | E-GEOD-46975 | biostudies-arrayexpress