Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica

ABSTRACT: Root-knot nematodes (RKNs) induce inside the vascular cylinder the giant cells (GCs) imbibed into a gall. Gene-repression in early developing GCs could be facilitated by small RNAs (sRNA) as miRNAs. 24nt-sRNAs, rasiRNAs and 21-22nt-sRNAs can also mediate epigenetic mechanisms. Three sRNA libraries from 3dpi galls and three from uninfected root segments were sequenced following Illumina-Solexa technology. Three sRNA libraries from 3dpi galls and three from uninfected root segments were sequenced

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Javier Cabrera 

PROVIDER: E-GEOD-71563 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica: a functional role for miR390 and its TAS3-derived tasiRNAs.

Cabrera Javier J   Barcala Marta M   García Alejandra A   Rio-Machín Ana A   Medina Clémence C   Jaubert-Possamai Stephanie S   Favery Bruno B   Maizel Alexis A   Ruiz-Ferrer Virginia V   Fenoll Carmen C   Escobar Carolina C  

The New phytologist 20151106 4

Root-knot nematodes (RKNs) induce inside the vascular cylinder the giant cells (GCs) embedded in the galls. The distinctive gene repression in early-developing GCs could be facilitated by small RNAs (sRNA) such as miRNAs, and/or epigenetic mechanisms mediated by 24nt-sRNAs, rasiRNAs and 21-22nt-sRNAs. Therefore, the sRNA-population together with the role of the miR390/TAS3/ARFs module were studied during early gall/GC formation. Three sRNA libraries from 3-d-post-inoculation (dpi) galls induced  ...[more]

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