RNA sequencing of e15.5 pancreas from Wild Type, Blinc1-/- and Blinc+/- mice.

ABSTRACT: We report the transcriptome changes that result of the genomic deletion of one or two alleles of an islet-specific long non-coding RNA (Blinc1) in isolated pancreas from e15.5 mouse embryos. Pancreas from e15.5 embryos were dissected and total RNA extracted. Libraries were prepared from total RNA (RIN>8) with the TruSeq RNA prep kit (Illumina) and sequenced using the HiSeq2000 (Illumina) instrument. More than 20 million reads were mapped to the mouse genome (UCSC/mm9) using Tophat (version 2.0.4) with 4 mismatches and 10 maximum multiple hits. Significantly differentially expressed genes were calculated using DEseq.

ORGANISM(S): Mus musculus

SUBMITTER: Lori Sussel 

PROVIDER: E-GEOD-73711 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress