Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

49 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The differentially expressed genes in rice jmj704 mutants revealed through RNA-Seq

ABSTRACT: We sequenced mRNA from two-week old rice seedlings of jmj704 and wild-type (ZH11) plants to obtain the differntially expressed genes in jmj704 mutant. exzamination the differentially expressed genes between two-week old jmj704 and wild-type (ZH11) rice seedlings.

ORGANISM(S): Oryza sativa

SUBMITTER: Yuxuan Hou

PROVIDER: E-GEOD-74670 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

The differentially expressed genes in rice jmj704 mutants revealed through RNA-Seq

Project description:We sequenced mRNA from two-week old rice seedlings of jmj704 and wild-type (ZH11) plants to obtain the differntially expressed genes in jmj704 mutant.

2015-11-05 | GSE74670 | GEO

glutathione peroxidase 1 (GPX1) interactome

Project description:Native protein extracts from 2-week-old seedlings of wild-type and GPX1-OE lines were used to identify interactions partners of glutathione peroxidase 1 in rice.

2022-07-07 | PXD027157 | JPOST Repository

Energetics- and transport-related protein abundance responds differentially to salt in Oryza australiensis roots

Project description:Salinity is a major constraint on agricultural productivity worldwide. Despite the serious impacts of salinity on rice yields, particularly in Asia, mechanisms of salt tolerance in wild rice species are yet to be explored. Here we extracted and quantified root microsomal proteins of Oryza australiensis accessions contrasting in salt tolerance. Whole root systems of two-week-old seedlings were treated with 80 mM NaCl for 30 days or left untreated. Proteins were quantified by tandem mass tags (TMT) and triple-stage MS. We found >200 differentially expressed proteins (DEPs) between the salt-treated and control in the two accessions (p-value <0.05). Gene Ontology (GO) analysis showed that ‘metabolic process’, ‘transport’ and ‘transmembrane transporter’ activities were highly responsive categories following salt treatment of the O. australiensis seedlings. In particular, ATPases and SNARE proteins were up-regulated in the salt-tolerant accession and appeared to have a major role in response to salinity. ATPases are the central link between energy generation and transport, while SNARE proteins facilitate vesicle fusion and interact with voltage-gated potassium channels to regulate K+ influx. We successfully validated the putative function of two strongly upregulated proteins, a monosaccharide transporter and a VAMP-like protein, by measuring the growth under salinity of yeast mutants in which homologous genes were deleted. Our results demonstrate the potential use of wild species as a source of new mechanisms of salt tolerance for the breeding of elite cultivars of rice.

2019-09-11 | PXD013701 | Pride

E-GEOD-17499

Project description:Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition

2015-05-15 | E-GEOD-17499 | ExpressionAtlas

E-GEOD-25073

Project description:Expression data from rice seedlings of wild type and the CHR729 mutant

2016-06-09 | E-GEOD-25073 | ExpressionAtlas

E-MTAB-9027

Project description:RNA-seq of Arabidopsis of five-day-old wild type and abi4-1 seedlings

2020-07-20 | E-MTAB-9027 | ExpressionAtlas

E-GEOD-38218

Project description:Gene expression data from cortex of 9 week old wild type, R6/2, HDAC4het and R6/2::HDAC4het mice

2014-10-27 | E-GEOD-38218 | ExpressionAtlas

E-GEOD-38219

Project description:Gene expression data from cortex of 15 week old wild type, R6/2, HDAC4het and R6/2::HDAC4het mice

2014-10-27 | E-GEOD-38219 | ExpressionAtlas

Expression data of one-week-old rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours

Project description:Expression profiles of one-week-old rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours were monitored by microarray that contains approximately 60,000 rice clones (Affymetrix GeneChip). The probes were prepared from RNAs isolated from rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours, respectively, and those non-treated controls. For hybridization, two biological replicates were used to extract RNAs from different batches of plants.

2012-06-18 | GSE35984 | GEO

B1Raf_Phosphoproteome_Raw_Data

Project description:(1) Phosphopeptide abundances of group B-Rafs, SnRK2s or SnRK2 substrates in the aerial parts of soil-grown Arabidopsis wild-type (Col-0) seedlings with/without water supply for indicated periods. Data were obtained from three independent biological replicates. (2)Phosphopeptide abundances in 2-week-old Arabidopsis wild-type (Col-0) seedlings treated with/without dehydration on the filter paper for 30 min. Data were obtained from three independent biological replicates. (3) Phosphopeptide abundances in 2-week-old Arabidopsis wild-type (Col-0), raf13-1raf15-1 or ireh1-2 seedlings under optimal growth conditions. Data were obtained from three independent biological replicates.

2024-12-24 | PXD040996 | JPOST Repository

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data