Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor, MONGOOSE1 Â

ABSTRACT: RNAseq data for Col-0. cob-6, sfr6-3 and cob-6sfr6-3 7 days old seedlings grown in 24h light with 0

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Nadav Sorek

PROVIDER: E-GEOD-75199 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor, MONGOOSE1

Project description:RNAseq data for Col-0. cob-6, sfr6-3 and cob-6sfr6-3

2015-12-31 | GSE75199 | GEO

atnsrs-study the role of AtNSRs proteins in the regulation of gene expression

Project description:blanc-08-01_2012_01_rnapaths_nsr - atnsrs - study the role of AtNSRs proteins in the regulation of gene expression - comparaison between Arabidopsis thaliana Col-0 and Atnsra/b double mutant treated or not with 24h 1µM NAA

2012-10-01 | GSE39659 | GEO

Gene expression profiling of 35S:AtMYB102-SRDXplant under salt stress treatment

Project description:Transcriptional profiling of Arabidopsis transgenic 35S:AtMYB102-SRDX plant under MS medium containing 200mM NaCl for 24h. Transgenic Arabidopsis (background : Col-0) overexpressing AtMYB102 fused to an active transcriptional repression domain (SRDX) showed strong salt tolerance.

2010-01-21 | GSE19893 | GEO

Arabidopsis thaliana

Project description:RNAseq of Arabidopsis thaliana Col-0 inflorescences

| PRJNA301350 | ENA

Transcriptome analyses of Pst DC3000-inoculated Arabidopsis thaliana Col-0 and 35S::CBP60g plants at normal and elevated temperature

Project description:We performed RNA sequencing of Pseudomonas syringae pv. tomato (Pst) DC3000-infected A. thaliana Col-0 and 35S::CBP60g plants at normal (23C) and elevated (28C) temperatures. 4-week-old plants were pre-incubated at 23C and 28C for 48h and then leaves were syringe-infiltrated with DC3000 bacterial inoculum. Plants were incubated at their respective temperatures (23C or 28C) for another 24h post-inoculation before tissue collection for RNA extraction. RNA samples for submitted for RNA sequencing and we found different clusters of DC3000-regulated genes that were similarly or differentially regulated between Col-0 and 35S::CBP60g at elevated temperature. Temperature-downregulated DC3000-induced genes in Col-0 plants that were restored in 35S::CBP60g plants were enriched for immunity/defense-related genes, including those essential for host salicylic acid (defense hormone) biosynthesis and accumulation.

2022-05-05 | GSE197771 | GEO

Total RNA sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0 in Arabidopsis [msh1_graft_leaf_RNA-seq]

2020-09-20 | GSE152565 | GEO

Gene Expression Comparing Col to WS to Identify conserved cold-responsive Affymetrix signatures

Project description:Gene expression Arabidopsis 24h cold-treated, 4c, seedlings to identify a *gold-standard* set of cold-responsive transcripts. Most of the CBF overexpression lines are in WS, therefore, it is necessary to identify a consistent set of transcripts that are detectible as cold-induced on the ATH1 platform for both WS and Columbia, so that appropriate comparisons can be made to determine the effects of low temperature in CBF overexpressing or loss of function plants in a WS background and an attempt can be made to compare the results of altered CBF function to published microarray studies. We aimed to identify a set of *gold-standard* cold responsive transcripts that were induced in multiple different experiments performed by different researchers and were detectible in both the WS and Col-0 ecotypes. This series contributes the 24h cold-treated WS ecotypes, along with additional Col-0 cold-treated and control samples for normalization purposes. Keywords: Expression profiling by array

2014-12-31 | GSE64575 | GEO

Coordination between the microbiota and the root diffusion barriers is required for plant mineral nutrient homeostasis

Project description:RNASeq of roots from two genotypes of Arabidopsis thaliana plants, Col-0 and myb36-2 grown axenically or with a 41 member bacterial Synthetic Community (SynCom) to explore the interaction between the root diffusion barriers and the root microbiome.

2020-11-01 | GSE151376 | GEO

Bisulfite (methylome) sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0; msh1 mutant; dcl2,3,4,msh1 quadruple mutant in Arabidopsis [msh1_graft_BS-seq]

Project description:Col-0 floral stem was grafted on the msh1 mutant (Col-0/msh1); on the dcl2,3,4,msh1 quadruple mutant (Col-0/dcl2,3,4,msh1); on Col-0 (Col-0/Col-0). Seeds were collected from the grafted Col-0 scion after grafts were established. Seed coming from the graft then were grown on the peat mix, leaf tissue was collected at the bolting and used for the bisulfite sequencing (methylome). Tissue from the msh1 mutant and dcl2,3,4,msh1 quadruple mutants used as rootstocks was similarly collected at the bolting stage and used for the bisulfite sequencing.

2020-09-20 | GSE152564 | GEO

Detection of expression differences between Col-0 and ozs3 (overly zinc sensitive 3)

Project description:The Zn-hypersensitive EMS mutant ozs3 (overly zinc sensitive) shows some additional pleiotropic effects compared to Col-0 wildtype. Most severe effects are a complete growth arrest at 4°C (seedling stage) and an altered root morphology even under control conditions. To detect the underlying transcriptional differences we analyzed the root transcriptome under control and cold stress (4°C, 24h) conditions.

2020-04-07 | GSE113547 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data